Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0492
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 100 4e-22
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 100 4e-22
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 81 2e-16
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 81 3e-16
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 81 3e-16
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 81 3e-16
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 81 3e-16
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 81 3e-16
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 73 8e-14
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 73 8e-14
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 61 4e-10
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 61 4e-10
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 52 1e-07
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 28 3.1
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 28 3.1
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 28 3.1
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 27 4.1
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 27 5.4
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 5.4
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 27 5.4
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 5.4
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 27 5.4
Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical pr... 27 7.1
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z72505-6|CAA96613.2| 358|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 26 9.4
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 26 9.4
AF216966-1|AAF23508.1| 358|Caenorhabditis elegans seven transme... 26 9.4
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 26 9.4
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 100 bits (240), Expect = 4e-22
Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = -2
Query: 348 YKSKKLRVKY-KHTVQDGA*S*PRGYTQTH*GDRKMLIQSAIVRIM*TRKTLKHQHLVVE 172
Y +KK+RV K T++ A + DRK +I + IVRIM TRK ++HQ L+ E
Sbjct: 678 YMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTE 737
Query: 171 VLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA 43
V+ QLS RFKP+V +IK+CI LIEKEY+ RTEG+KD Y YLA
Sbjct: 738 VITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 100 bits (240), Expect = 4e-22
Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = -2
Query: 348 YKSKKLRVKY-KHTVQDGA*S*PRGYTQTH*GDRKMLIQSAIVRIM*TRKTLKHQHLVVE 172
Y +KK+RV K T++ A + DRK +I + IVRIM TRK ++HQ L+ E
Sbjct: 678 YMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTE 737
Query: 171 VLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA 43
V+ QLS RFKP+V +IK+CI LIEKEY+ RTEG+KD Y YLA
Sbjct: 738 VITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 81.4 bits (192), Expect = 2e-16
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Frame = -2
Query: 348 YKSKKLRVKYKHTVQDGA*S*PRGYTQ-TH*GDRKMLIQSAIVRIM*TRKTLKHQHLVVE 172
Y +KK+RV ++ Q T DRK I++ IVRIM TRK+L H L+ E
Sbjct: 627 YANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINE 686
Query: 171 VLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA 43
+++QL SRF P V +IK CI++LIE+ Y+ R+E E + Y YLA
Sbjct: 687 IISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK ++ AIVRIM TRK LKH LV E+++Q RF P VP IKK I+ LIEK Y++RT
Sbjct: 674 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT 733
Query: 75 EGEKDTYRYLA 43
+ + D Y+YLA
Sbjct: 734 D-QNDEYQYLA 743
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK ++ AIVRIM TRK LKH LV E+++Q RF P VP IKK I+ LIEK Y++RT
Sbjct: 722 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT 781
Query: 75 EGEKDTYRYLA 43
+ + D Y+YLA
Sbjct: 782 D-QNDEYQYLA 791
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK ++ AIVRIM TRK LKH LV E+++Q RF P VP IKK I+ LIEK Y++RT
Sbjct: 705 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT 764
Query: 75 EGEKDTYRYLA 43
+ + D Y+YLA
Sbjct: 765 D-QNDEYQYLA 774
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK ++ AIVRIM TRK LKH LV E+++Q RF P VP IKK I+ LIEK Y++RT
Sbjct: 781 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT 840
Query: 75 EGEKDTYRYLA 43
+ + D Y+YLA
Sbjct: 841 D-QNDEYQYLA 850
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 81.0 bits (191), Expect = 3e-16
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK ++ AIVRIM TRK LKH LV E+++Q RF P VP IKK I+ LIEK Y++RT
Sbjct: 674 DRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT 733
Query: 75 EGEKDTYRYLA 43
+ + D Y+YLA
Sbjct: 734 D-QNDEYQYLA 743
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 72.9 bits (171), Expect = 8e-14
Identities = 36/71 (50%), Positives = 48/71 (67%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK+ +++AIVRIM RK L H +LV EV QL RF P +IK+ I+ LIE+EYL R
Sbjct: 710 DRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARD 769
Query: 75 EGEKDTYRYLA 43
E + Y+Y+A
Sbjct: 770 EHDHRAYQYIA 780
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 72.9 bits (171), Expect = 8e-14
Identities = 36/71 (50%), Positives = 48/71 (67%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK+ +++AIVRIM RK L H +LV EV QL RF P +IK+ I+ LIE+EYL R
Sbjct: 707 DRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARD 766
Query: 75 EGEKDTYRYLA 43
E + Y+Y+A
Sbjct: 767 EHDHRAYQYIA 777
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 60.9 bits (141), Expect = 4e-10
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DR+ I +A+VRIM RK L HQ L+ E+L QL RF IKK ++ LIE+EY+ R
Sbjct: 735 DRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRD 792
Query: 75 EGEKDTYRYLA 43
E +Y Y+A
Sbjct: 793 PEEASSYNYVA 803
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 60.9 bits (141), Expect = 4e-10
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DR+ I +A+VRIM RK L HQ L+ E+L QL RF IKK ++ LIE+EY+ R
Sbjct: 772 DRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRD 829
Query: 75 EGEKDTYRYLA 43
E +Y Y+A
Sbjct: 830 PEEASSYNYVA 840
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 52.4 bits (120), Expect = 1e-07
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = -2
Query: 252 RKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTE 73
R++ +Q IV+I+ TRKT L +E++ L F P +IK+ ID LIE +Y+ER
Sbjct: 696 RELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRA 755
Query: 72 GEKDTYRYLA 43
+ +T+ Y++
Sbjct: 756 DDINTFVYIS 765
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = -1
Query: 229 HSPDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYAD*EGIFRAYRGREGHLQI 50
H P N P A+A + Q QAQ++ Q+ + + E A R G
Sbjct: 330 HGPPN-GQPGPQAAAAQHAAQQQAAAQAQAQAAAQQQQQQQREQEAAAAAQRNGAGRATT 388
Query: 49 PG 44
PG
Sbjct: 389 PG 390
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = -1
Query: 229 HSPDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYAD*EGIFRAYRGREGHLQI 50
H P N P A+A + Q QAQ++ Q+ + + E A R G
Sbjct: 330 HGPPN-GQPGPQAAAAQHAAQQQAAAQAQAQAAAQQQQQQQREQEAAAAAQRNGAGRATT 388
Query: 49 PG 44
PG
Sbjct: 389 PG 390
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 195 KHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEY 88
KH V EV N L S P++ KK I + + EY
Sbjct: 868 KHMKFVYEVRNLLESTAGPKIDTSKKGIVLQVTPEY 903
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -2
Query: 177 VEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA*SRHSQEER 16
+E+ N+ ++ F P PV+ ++ L K + + E ++A +H + E+
Sbjct: 47 IELFNEKAASFNPTKPVVAASVEPLYCKACRKSIKSENAMTDHVASKKHKENEK 100
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 195 KHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEY 88
KH V EV N L S P++ KK I + + EY
Sbjct: 868 KHMKFVYEVRNLLESTAGPKIDTSKKGIVLQVTPEY 903
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical protein
F55D10.1 protein.
Length = 955
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +1
Query: 103 QHIDAFLDDRNSGLEP*RQLVEDFHH*VLML-KGLARLHYP---DYGGLNKHLSVSSMCL 270
+HI F D + S + +++FH VL K + + +Y GL L + L
Sbjct: 810 KHIVLFTDVKASTSQLRPLAIDNFHQPVLAFNKNPEKFEFNRLLEYSGLKFELPIGIHLL 869
Query: 271 CVASWSTLSSVLNGVFIFHAE 333
+ W SS++ I+H E
Sbjct: 870 TLEKWHKKSSLIRFENIYHGE 890
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 223 PDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYA 104
P+ +A P + P G PQP +T+ + SSC ++A
Sbjct: 195 PNASSAATPLSGTPGGAGPQP--MTMPSTSSCQMTTPKWA 232
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 223 PDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYA 104
P+ +A P + P G PQP +T+ + SSC ++A
Sbjct: 270 PNASSAATPLSGTPGGAGPQP--MTMPSTSSCQMTTPKWA 307
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 223 PDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYA 104
P+ +A P + P G PQP +T+ + SSC ++A
Sbjct: 204 PNASSAATPLSGTPGGAGPQP--MTMPSTSSCQMTTPKWA 241
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 223 PDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYA 104
P+ +A P + P G PQP +T+ + SSC ++A
Sbjct: 348 PNASSAATPLSGTPGGAGPQP--MTMPSTSSCQMTTPKWA 385
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 223 PDNVNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYA 104
P+ +A P + P G PQP +T+ + SSC ++A
Sbjct: 195 PNASSAATPLSGTPGGAGPQP--MTMPSTSSCQMTTPKWA 232
>Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical
protein F18E2.4 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 187 LMLKGLARLHYPDYGGLNKHLSVSSMCLCVASWSTLSSVLNGVF 318
L +KG +YP + L L +S C+ A STL V+N VF
Sbjct: 93 LFIKGAVYCNYPTFIYLAGCLGLSGWCM--ACGSTLLLVINRVF 134
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 207 RKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLE-RTEGEKDTYRY 49
+KTL+ V+ N KP VP+ KK + +K E KD Y Y
Sbjct: 236 KKTLEVNAFVINCYNHSKKAVKPEVPIWKKPFPGMKDKNLPEDEILRVKDLYSY 289
>Z72505-6|CAA96613.2| 358|Caenorhabditis elegans Hypothetical
protein C50C10.7 protein.
Length = 358
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 276 SLLVNFKLRLERCVYIS 326
+LL N++L++E C YIS
Sbjct: 169 TLLSNYRLKIEECAYIS 185
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPV 127
DR+ LI +I KT++ HL ++ + + R PRVP+
Sbjct: 1760 DREGLIAEYRHQIAEQTKTIEELHLKLKTFSAAARRTSPRVPM 1802
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 214 VNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYAD*EGIFRAYRGREGHL 56
V + P + P+ PQP+ +Q Q + + A G+ + G E HL
Sbjct: 225 VKVEPPFSHTPTIQIPQPIPTPIQHQQQEQSNLLQPATLNGMNNPWMGMEDHL 277
>AF216966-1|AAF23508.1| 358|Caenorhabditis elegans seven
transmembrane receptor 2 protein.
Length = 358
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 276 SLLVNFKLRLERCVYIS 326
+LL N++L++E C YIS
Sbjct: 169 TLLSNYRLKIEECAYIS 185
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 214 VNAQDP*ASAPSGGSPQPVVVTVQAQSSCHQEMHRYAD*EGIFRAYRGREGHL 56
V + P + P+ PQP+ +Q Q + + A G+ + G E HL
Sbjct: 223 VKVEPPFSHTPTIQIPQPIPTPIQHQQQEQSNLLQPATLNGMNNPWMGMEDHL 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,269
Number of Sequences: 27780
Number of extensions: 167859
Number of successful extensions: 475
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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