Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0492
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02980.1 68414.m00268 cullin family protein similar to cullin...    72   2e-13
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    71   2e-13
At1g69670.1 68414.m08018 cullin, putative contains similarity to...    70   7e-13
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo...    70   7e-13
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C...    64   5e-11
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    27   5.0  
At2g33200.1 68415.m04067 F-box family protein contains F-box dom...    27   6.6  

>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
           [Homo sapiens] GI:3139077; contains Pfam profile
           PF00888: Cullin family
          Length = 742

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 35/71 (49%), Positives = 48/71 (67%)
 Frame = -2

Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
           DR+  I +A+VRIM +RK L HQ LV E +  LS  FKP + +IKK I+ LI ++YLER 
Sbjct: 672 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEHLSKMFKPDIKMIKKRIEDLISRDYLERD 731

Query: 75  EGEKDTYRYLA 43
               +T++YLA
Sbjct: 732 TDNPNTFKYLA 742


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 36/71 (50%), Positives = 48/71 (67%)
 Frame = -2

Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
           DR+  I +AIVRIM +RK L HQ LV E + QLS  FKP +  IKK ++ LI ++YLER 
Sbjct: 668 DRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 727

Query: 75  EGEKDTYRYLA 43
           +   + +RYLA
Sbjct: 728 KENPNMFRYLA 738


>At1g69670.1 68414.m08018 cullin, putative contains similarity to
           Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
           [Homo sapiens]; contains Pfam profile PF00888: Cullin
           family
          Length = 732

 Score = 69.7 bits (163), Expect = 7e-13
 Identities = 34/71 (47%), Positives = 48/71 (67%)
 Frame = -2

Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
           DRK  I++AIVRIM +R+ L H +++ EV  QL +RF      IKK I+ LIE+++LER 
Sbjct: 662 DRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQTRFLANPTEIKKRIESLIERDFLERD 721

Query: 75  EGEKDTYRYLA 43
             ++  YRYLA
Sbjct: 722 NTDRKLYRYLA 732


>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
           3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
           contains Pfam profile PF00888: Cullin family
          Length = 732

 Score = 69.7 bits (163), Expect = 7e-13
 Identities = 35/71 (49%), Positives = 47/71 (66%)
 Frame = -2

Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
           DRK  I++AIVRIM +RK L H +++ EV  QL  RF      IKK I+ LIE+++LER 
Sbjct: 662 DRKPQIEAAIVRIMKSRKILDHNNIIAEVTKQLQPRFLANPTEIKKRIESLIERDFLERD 721

Query: 75  EGEKDTYRYLA 43
             ++  YRYLA
Sbjct: 722 STDRKLYRYLA 732


>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
           Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
           profile PF00888: Cullin family
          Length = 792

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 40/102 (39%), Positives = 56/102 (54%)
 Frame = -2

Query: 348 YKSKKLRVKYKHTVQDGA*S*PRGYTQTH*GDRKMLIQSAIVRIM*TRKTLKHQHLVVEV 169
           Y+ K   ++ K TV++   +  R +      DR+  I +AIVRIM TRK L H  L+ E+
Sbjct: 698 YRIKVNAIQMKETVEENTSTTERVFQ-----DRQYQIDAAIVRIMKTRKVLSHTLLITEL 752

Query: 168 LNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA 43
             QL    KP    +KK I+ LI++EYLER +     Y YLA
Sbjct: 753 FQQLKFPIKP--ADLKKRIESLIDREYLEREKSNPQIYNYLA 792


>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  EWRDHARYL*VSFSPSVRSKYSFS 100
           E RD A Y   S +PS+RS YSF+
Sbjct: 220 EDRDRAAYSYTSNTPSLRSNYSFT 243


>At2g33200.1 68415.m04067 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 89  YSFSISISMHFLMTGTLGLNRDDNWLRTSTTRC 187
           Y  + SI  H+L T   G   DD+WL    T+C
Sbjct: 162 YVVAWSIKQHYLFTYKKG---DDSWLNLEGTKC 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,354,601
Number of Sequences: 28952
Number of extensions: 155034
Number of successful extensions: 379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)