Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0491
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   3.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   3.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   5.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 152 GAPPHELPHPAPNGAPP 202
           G PPH    P   G PP
Sbjct: 59  GIPPHHYGGPPSGGQPP 75



 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 143 PGAGAPPHELPHP 181
           P  G PP  +P+P
Sbjct: 69  PSGGQPPQGMPYP 81


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 101 PVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPP 202
           P +V+A        P + A P  +P P+ + +PP
Sbjct: 201 PTKVKASKASPAAAPRSVATPTGIPTPSTSASPP 234


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 291 LSGYQGVHTCYQYY 332
           + GYQG H  Y +Y
Sbjct: 378 VQGYQGEHPNYNHY 391


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 291 LSGYQGVHTCYQYY 332
           + GYQG H  Y +Y
Sbjct: 326 VQGYQGEHPNYNHY 339


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 149 AGAPPHELP 175
           AGAPP E+P
Sbjct: 10  AGAPPQEMP 18


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 137 SPPLADMLVLRPEQF 93
           SPPL+ +  L P+QF
Sbjct: 538 SPPLSQIHDLSPDQF 552


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,469
Number of Sequences: 336
Number of extensions: 1505
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)