Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0491
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   3.8  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.0  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    25   6.6  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.6  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    24   8.7  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    24   8.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 134 DCRPGAGAPPH-ELPHPAPNGAPP 202
           + RP   APP   +P P+P  APP
Sbjct: 136 ELRPPTSAPPRPSIPPPSPASAPP 159


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 43  ENFQFPKQLNTDGGSGINCSGRSTSISA 126
           EN Q P+ L T+    I   GRS +++A
Sbjct: 624 ENNQMPQVLETEAAPSIASEGRSITVNA 651


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 164 HELPHPAPNGAPPDNHH 214
           H LPHP     PPD  H
Sbjct: 238 HSLPHPPNMFEPPDEDH 254


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 98   VPVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPP 202
            VPV   A P+    +P   APP     PAP+GAPP
Sbjct: 1133 VPVPSGAPPVP---KPSVAAPPV----PAPSGAPP 1160



 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 143  PGAGAPPHELPHPAPNGAPP 202
            P   AP    P PAP+G PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPP 1093


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 294 RADVVSSHVPAAP 256
           RAD VS HVPA+P
Sbjct: 247 RADFVSLHVPASP 259


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 104 PEQFIPLPPSVFNCFGN*KFSFFVKL 27
           P QFI LPP+VF  F    F F+ +L
Sbjct: 108 PIQFIALPPTVFLLF----FKFYSRL 129


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 146 GAGAPPHELPHPAPNGAP 199
           G  A P   PH  PN AP
Sbjct: 53  GEAATPKHKPHAGPNAAP 70


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 33  YKKRKLSISKTVEY*WWQWDKLFRSKYK 116
           YKK  + I + ++  W Q DK F  K K
Sbjct: 205 YKKGSIWIREPIDQEWHQQDKKFSVKQK 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,361
Number of Sequences: 5004
Number of extensions: 19545
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)