Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0491
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 30 0.70
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 30 0.70
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 30 0.70
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 0.70
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 29 1.6
12_01_0652 - 5512187-5512273,5512844-5513950 27 4.9
12_01_0406 - 3212007-3212757,3212856-3212988,3215840-3215927,321... 27 4.9
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 27 4.9
01_02_0007 + 10132380-10133201 27 4.9
11_05_0077 - 18866707-18867334,18867410-18867555 27 6.5
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 27 6.5
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 27 6.5
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080... 27 6.5
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 27 8.6
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 27 8.6
04_04_1560 - 34432491-34432837,34433097-34433292 27 8.6
01_03_0159 - 13325949-13326839 27 8.6
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 30.3 bits (65), Expect = 0.70
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 146 GAGAPPHELPHPAPNGAPP 202
G GAPP P+ AP GAPP
Sbjct: 76 GYGAPPSSQPYGAPYGAPP 94
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 30.3 bits (65), Expect = 0.70
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 146 GAGAPPHELPHPAPNGAPP 202
G GAPP P+ AP GAPP
Sbjct: 92 GYGAPPSSQPYGAPYGAPP 110
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 173 GAREAERPLPAC--SPPLADMLVLRPEQFI-PLPPSVFN 66
G P+P+C S PL + LVL+ P+PPS+FN
Sbjct: 206 GNNSLSGPIPSCIGSLPLLERLVLQCNNLTGPVPPSIFN 244
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 0.70
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPPDNHHN 217
P A PP P PAP PP +HH+
Sbjct: 273 PAAPPPPAGPPPPAPPPLPPSHHHH 297
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 149 AGAPPHELPHPAPNGAPPDNHHN 217
A AP H PHP +G P HH+
Sbjct: 19 AAAPHHHHPHPHAHGMHPHAHHH 41
>12_01_0652 - 5512187-5512273,5512844-5513950
Length = 397
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 149 AGAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXEGAAGTWELTTSALR 298
AGA PH +P P P PP + AAGTW + A++
Sbjct: 140 AGAAPHPIPIPIPLLPPPAAEFD--NGQLAQSILDTAAAGTWGVGIQAMK 187
>12_01_0406 -
3212007-3212757,3212856-3212988,3215840-3215927,
3216124-3216489
Length = 445
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 89 G*IVPVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPPDN 208
G + V+ + L+ +P AGAP P P P PPD+
Sbjct: 366 GRVTVASVKNFQLVAATQPAAGAPTPSQPAPPP---PPDH 402
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -1
Query: 209 DCQVEHRSEQGAGAREAERPLPACS--PPLADMLVLRPEQFIPLPPSVFNC 63
D VE E+G A + P P + D +V RP F P +V +C
Sbjct: 896 DVSVEQEQEKGQLAVKRSTPAPGSDILELVDDAIVFRPVDFTPFRKTVTDC 946
>01_02_0007 + 10132380-10133201
Length = 273
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 140 RPGAGAPPHELPHPAPNGAP 199
+P APP LP P PN P
Sbjct: 201 QPDPNAPPQPLPQPDPNSPP 220
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 140 RPGAGAPPHELPHPAPNGAPP 202
+P APP LP P PN P
Sbjct: 178 QPDPNAPPQPLPQPDPNNPQP 198
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 140 RPGAGAPPHELPHPAPNGAPP 202
+P APP LP P PN APP
Sbjct: 166 QPDPNAPPLPLPQPDPN-APP 185
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 200 VEHRSEQ-GAGAREAERPLPACSPPLADMLVLRPEQFIPLPPSV 72
V HR E G GAR R P PP + LRP +P S+
Sbjct: 61 VAHRGEDPGVGARRGARAGPRLLPPHRPPVPLRPLLRLPRTSSL 104
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPP 202
PG GAPP LP A PP
Sbjct: 8 PGTGAPPPPLPAAAAAAGPP 27
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 215 CGDCQVEHRSEQGAGAREAERPLPACSPPLADMLVLRPEQFIPLPPSVFN 66
C +CQ EHR G A + P+ +PP + + E P+ P + N
Sbjct: 182 CANCQ-EHRERTGRLAENSAVPMTVVNPPAVQEMSM-AESRGPVSPGMEN 229
>02_02_0609 +
12105616-12106336,12106514-12106646,12107849-12108048,
12108184-12108635,12109018-12109323
Length = 603
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 152 GAPPH-ELPHPAPNGAPPDNH 211
GAPP ELP P P APP H
Sbjct: 366 GAPPAAELPAPVPAPAPPAAH 386
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 140 RPGAGAPPHELPHPAPNGAPPDNH 211
R G APPH L P P PP +H
Sbjct: 27 RGGGSAPPHPLLRPPP---PPQSH 47
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPP 202
P GAPP + P+ AP+ PP
Sbjct: 793 PPYGAPPQQPPYGAPSQQPP 812
>04_04_1560 - 34432491-34432837,34433097-34433292
Length = 180
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 146 GAGAPPHELPHPAPNGAPPDNHH 214
G APP P P P+ APP H
Sbjct: 131 GHDAPPPASPPPPPSNAPPTPPH 153
>01_03_0159 - 13325949-13326839
Length = 296
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPP---DNHH 214
P A PP + P + APP DNHH
Sbjct: 137 PTAAIPPEPMTPPTSSPAPPPAVDNHH 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,937,614
Number of Sequences: 37544
Number of extensions: 182867
Number of successful extensions: 1001
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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