Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0491
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)                       29   1.6  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      27   5.0  
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)                 27   5.0  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 95  IVPVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPP 202
           ++ V++Q   LM  C  G G  P+  P P P+GAPP
Sbjct: 148 LIKVDIQQMNLMYKCS-GGGEGPN--PSPPPSGAPP 180


>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 143 PGAGAPPHELPHPAPNGAPPD 205
           P  GA PH    P P+G PPD
Sbjct: 291 PNGGATPHPGAMPTPSGEPPD 311


>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1097

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 101 PVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPP 202
           P+  + Y       PGAG  P  +P   P GAPP
Sbjct: 607 PIITKLYQQAGGAPPGAGGMPGGMPGGFPGGAPP 640


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 152  GAPPHELPHPAPNGAPPDNHH 214
            G PP ++P PAP G  P   H
Sbjct: 1609 GLPPPQVPVPAPTGGIPQQAH 1629


>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
          Length = 412

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 152 PLPACSPPLADMLVLRPEQFIP-LPPSVFNCFG 57
           PL    PP    L+LRP++F P +PP  F   G
Sbjct: 165 PLRMMPPPGMPPLLLRPQEFSPNIPPPRFGLTG 197


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 128 MVDCRPGAGAPPHELPHPAPNGAPPDNHH 214
           +  C   +G P H +P P P  AP   HH
Sbjct: 564 VASCDALSGMPTHRVPPPHPLSAPYRLHH 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,633,896
Number of Sequences: 59808
Number of extensions: 170023
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)