Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0491
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-1|AAK29863.2|  253|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   7.7  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      27   7.7  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     27   7.7  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    27   7.7  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    27   7.7  

>U20862-1|AAK29863.2|  253|Caenorhabditis elegans Hypothetical
           protein W06E11.4 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 212 GDCQVEHRSEQGAGAREAERPLPACSPPLADMLVLRPEQFIPLPPSVFN 66
           GD QV  +  Q A    +++ L   S  +A M+V  PE   P+PPSV +
Sbjct: 93  GDLQVSEKERQAA----SDQSLKEVSQLIASMVV-NPETKRPVPPSVID 136


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 98  VPVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAP 199
           +P   Q  P+   C PG   PP     P P+G P
Sbjct: 96  LPPWCQCEPIRPKCPPGPPGPPGCRGEPGPSGLP 129


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 YPLMVDCRPGAGAPPHELPHPAPNGAPP 202
           YP ++  RPG G PP       PN APP
Sbjct: 809 YPPLIPTRPGPGGPP-------PNMAPP 829


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 140 RPGAG-APPHELPHPAPNGAPP 202
           RP AG APP   P+  P GAPP
Sbjct: 743 RPPAGFAPPPGAPYGYPPGAPP 764


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 119 YPLMVDCRPGAGAPPHELPHPAPNGAPP 202
           YP ++  RPG G PP       PN APP
Sbjct: 809 YPPLIPTRPGPGGPP-------PNMAPP 829


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 86  VG*IVPVEVQAYPLMVDCRP-GAGAPPHELPHPAP 187
           +G I PV     P      P GAGAPP   P P P
Sbjct: 222 IGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 256


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 86  VG*IVPVEVQAYPLMVDCRP-GAGAPPHELPHPAP 187
           +G I PV     P      P GAGAPP   P P P
Sbjct: 208 IGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 86  VG*IVPVEVQAYPLMVDCRP-GAGAPPHELPHPAP 187
           +G I PV     P      P GAGAPP   P P P
Sbjct: 208 IGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,888,655
Number of Sequences: 27780
Number of extensions: 135624
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)