Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0491
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.84 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.5  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 143 PGAGAPPHELPHPAPNGAPPD 205
           PG    PH+ P     G+PP+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPN 41



 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 143 PGAGAPPHELPHPAPNGAP 199
           P  G+PP+    P P G P
Sbjct: 34  PQRGSPPNPSQGPPPGGPP 52


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 131 PLADMLVLRPEQFIPLP 81
           PL+D ++ R  + +P+P
Sbjct: 186 PLSDFVIHRSPELVPMP 202


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 141 LQSTISGYACTSTGTIYPTATISIQLFWKL 52
           + ST+SG      GT YP   +S +   KL
Sbjct: 135 VSSTLSGLEGELKGTFYPLTGMSKETQQKL 164


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 101 PVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAP 199
           P+   +YP  +      G  PH  PHP     P
Sbjct: 447 PLAHSSYPAAIQI----GHTPHHHPHPPETPGP 475


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 141 LQSTISGYACTSTGTIYPTATISIQLFWKL 52
           + ST+SG      GT YP   +S +   KL
Sbjct: 151 VSSTLSGLEGELKGTFYPLTGMSKETQQKL 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,887
Number of Sequences: 438
Number of extensions: 1697
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)