Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0491
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 0.44
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 29 1.8
At1g75800.1 68414.m08805 pathogenesis-related thaumatin family p... 29 1.8
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 28 2.4
At1g51580.1 68414.m05806 KH domain-containing protein 28 2.4
At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family... 27 4.1
At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family... 27 4.1
At3g27990.1 68416.m03493 expressed protein Unusual gene which co... 27 5.5
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 27 5.5
At5g67220.1 68418.m08473 nitrogen regulation family protein simi... 27 7.2
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 27 7.2
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 7.2
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 7.2
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 26 9.6
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 26 9.6
At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein sim... 26 9.6
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPPDNHHN 217
P GAP PHP APP NHHN
Sbjct: 228 PPGGAPMFAPPHPGMPPAPP-NHHN 251
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 143 PGAGAPPHELPH-PAPNGAPPDNH 211
P AP PH PAPN APP +H
Sbjct: 398 PPTPAPHRSQPHPPAPNPAPPRHH 421
>At1g75800.1 68414.m08805 pathogenesis-related thaumatin family
protein similar to receptor serine/threonine kinase PR5K
[Arabidopsis thaliana] GI:1235680; contains Pfam
profile: PF00314 Thaumatin family
Length = 330
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 16 VQFISFTKKENFQFPKQLNTDGGSGINCSGRSTSISANG 132
+ F + + + P + GGSG+NCS + NG
Sbjct: 123 LDFYDVSLVDGYNVPMLVAPQGGSGLNCSSTGCVVDLNG 161
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = +2
Query: 122 PLMVDCRPGAGAPPHELPHPA--PNGAP--PDNHH 214
P D P A PP +LP PA P G P P HH
Sbjct: 130 PADEDESPPAPPPPEQLPPPASSPQGGPKKPKKHH 164
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 113 QAYPLMVDCRPGAGAPP--HELPHPAPNGAPPDNH 211
+A L+ +C +GAPP E P P P G PP+ H
Sbjct: 211 KALLLVTNCLQESGAPPTWDECPFPQP-GYPPEYH 244
>At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 199
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 113 QAYPLMVDCRPGAGAPPHELPHPAPNGAPPDNH 211
QA P V P G PP P P G PP +
Sbjct: 142 QATPPAVGYPPQQGYPPSGYPQHPPQGYPPSGY 174
>At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 255
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 113 QAYPLMVDCRPGAGAPPHELPHPAPNGAPPDNH 211
QA P V P G PP P P G PP +
Sbjct: 198 QATPPAVGYPPQQGYPPSGYPQHPPQGYPPSGY 230
>At3g27990.1 68416.m03493 expressed protein Unusual gene which
contains a pectinesterase gene within a downstream UTR
intron, transcribed on the opposite strand; supported by
cDNA gi:14596042
Length = 91
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 32 LQKKKTFNFQNS*ILMVAVG*IVPVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPPDNH 211
L++K+ F S +L V V + + + PL+ D H+L A N A D+H
Sbjct: 15 LRRKQLQTFTFSWLLPVLVKQETSLRLSSMPLVRDTSQHHSHLHHQLTPAAFNSAESDHH 74
Query: 212 HN 217
H+
Sbjct: 75 HH 76
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPPDNH 211
PGA PP + +P P G PP +
Sbjct: 26 PGAYPPPPQGAYPPPGGYPPQGY 48
>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
to unknown protein (gb|AAF51525.1) ; contains Pfam
domain PF01207: Dihydrouridine synthase (Dus); similar
to (SP:P45672) NIFR3-like protein (SP:P45672)
[Azospirillum brasilense]
Length = 423
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 42 RKLSISKTVEY*WWQWDKLFRSKY 113
R LSI VE W W KL R KY
Sbjct: 67 RVLSIDTRVERAWAHWKKLGRPKY 90
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 107 EVQAYPLMVDCRPGAGAPPHELPHPAP--NGAPP 202
+VQ YP P +G PP +P P +G PP
Sbjct: 174 QVQQYPQPSGYPPASGYPPQPSAYPPPSTSGYPP 207
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGA 196
P AGAP H+L PAP A
Sbjct: 410 PSAGAPHHQLHSPAPISA 427
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 101 PVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPP 202
P V + P V P A PP P PAP +PP
Sbjct: 87 PPPVASPPPPVASPPPATPPPVATPPPAPLASPP 120
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 101 PVEVQAYPLMVDCRPGAGAPPHELPHPAPNGAPP 202
P V + P V P A PP P PAP +PP
Sbjct: 87 PPPVASPPPPVASPPPATPPPVATPPPAPLASPP 120
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 143 PGAGAPPHELPHPAPNGAPPDN 208
P G+PP P P G+PP +
Sbjct: 463 PSPGSPPTSPTTPTPGGSPPSS 484
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +2
Query: 143 PG-AGAPPHELPHPAPNGAPPDNHH 214
PG G PP P P G PP N++
Sbjct: 144 PGQGGGPPGMAPIPGQGGGPPPNYN 168
>At1g22880.1 68414.m02856 glycosyl hydrolase family 9 protein
similar to GB:AAB65156 and GB:AAA96135
Length = 484
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 55 FPKQLNTDGGSGINCSGRSTSISANGGLQ 141
FPK+++ G S + + RS S+ NGG Q
Sbjct: 397 FPKRIHHRGSSLPSRAVRSNSLGCNGGFQ 425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,379,489
Number of Sequences: 28952
Number of extensions: 123160
Number of successful extensions: 449
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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