Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0487
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    30   0.27 
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    27   2.6  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   3.4  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   5.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   5.9  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   5.9  

>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 412 SKISTVATTCY-SGDNLSSTSLSCLESVLVSRFLTNSFLTNKCF 284
           SKI  + T C  SGD +    LSC++ ++V+     +   + CF
Sbjct: 265 SKIYALVTHCVLSGDAIERVKLSCIDKLIVTNTAPQTITPSGCF 308


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 234 NDTSRMTELILSFTNKIIRKQPLVK 160
           ++ + MT+++L F  KII+K+P ++
Sbjct: 219 HERTLMTDMLLGFVKKIIKKRPALR 243


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 429 SYYSCCPVKRFTCVIQLALWNSVTS 503
           +Y+  CP++  TC I    W  + S
Sbjct: 165 NYFVTCPLELTTCAITFKFWTEINS 189


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 354 DVELKLSPE*QVVATVEIFDRVLLRSYYSCCPVKRFTCVIQLALW 488
           D EL+LS +  +  T+   +  L+RSY  C P  R   ++ +  W
Sbjct: 156 DSELQLSCDCNINKTISTLNTRLMRSYVLCDPRVR-PLIVMIKYW 199


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 682 RLYQDPSKKWG-S*AIIVLPNYGKSIPKEVNVHNNSVS 572
           R  ++PS++   S ++  L N    IPKE ++H NS+S
Sbjct: 100 RNIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSIS 137


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 401 RDFRSSLAQILLFVLSSK 454
           RDFR+ LA ++LF +SSK
Sbjct: 866 RDFRAQLALLVLFWISSK 883


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 427 LSKTRSKISTVATTCYSGDN 368
           L +TRS   T+ T C+ GD+
Sbjct: 697 LDETRSSFKTLTTMCFGGDD 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,247
Number of Sequences: 5004
Number of extensions: 49386
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)