Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0487
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)                  29   4.7  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 28   6.2  
SB_18432| Best HMM Match : VirB3 (HMM E-Value=6.3)                     28   6.2  

>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
          Length = 824

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 587 MYVYFFRNRFSVIWQYYYSLTTPLF 661
           M V  F  R +++WQY+ S+  PLF
Sbjct: 797 MAVPLFYGRTTLLWQYHSSMVVPLF 821


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 239 HDSLSCIENEVRFTRETLIRQKR 307
           H  L CI + ++F +ET++R +R
Sbjct: 146 HHRLICIHDRIQFNQETIVRMRR 168


>SB_18432| Best HMM Match : VirB3 (HMM E-Value=6.3)
          Length = 179

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 239 HDSLSCIENEVRFTRETLIRQKR 307
           H  L CI + ++F +ET++R +R
Sbjct: 64  HHRLICIHDRIQFNQETIVRMRR 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,828,783
Number of Sequences: 59808
Number of extensions: 319501
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)