Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0487
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC084153-4|AAK84598.2|  836|Caenorhabditis elegans Hypothetical ...    29   3.1  
U88180-12|AAO21402.1|  476|Caenorhabditis elegans Hypothetical p...    29   4.1  
U88180-11|AAO21401.1|  566|Caenorhabditis elegans Hypothetical p...    29   4.1  
U88180-10|AAO21403.1|  532|Caenorhabditis elegans Hypothetical p...    29   4.1  
U88180-9|AAM22071.1|  517|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U88180-8|AAB42296.1|  607|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical
           protein F39D8.3 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 274 IYERNTYSSEKNSSKTLILERSPNTIE 354
           I+E    SSEKN SKT ++ER+   +E
Sbjct: 140 IHEHYQKSSEKNKSKTEVIERNVEALE 166


>AC084153-4|AAK84598.2|  836|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.9 protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 497 NTVPKC--ELDDASESLYWTARIIRSEQDSIENLDGCHYLLFRRQ 369
           +T+ KC  EL+D + S+ +  +IIR   +S++ +  C+ LL + Q
Sbjct: 332 DTINKCMLELEDLNSSIEFLNQIIRENVESLDLMLHCYCLLCQTQ 376


>U88180-12|AAO21402.1|  476|Caenorhabditis elegans Hypothetical
           protein T27A3.1d protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 VLKMRSDLREKHLFVRKEFVKNLDTRTLSKHDRDVELKL 371
           +L+   DL+ K+ F+ +   KNLDT    KH+ +  ++L
Sbjct: 47  LLEQNKDLQTKNEFLEESVNKNLDTIVQLKHELNQRIEL 85


>U88180-11|AAO21401.1|  566|Caenorhabditis elegans Hypothetical
           protein T27A3.1c protein.
          Length = 566

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 VLKMRSDLREKHLFVRKEFVKNLDTRTLSKHDRDVELKL 371
           +L+   DL+ K+ F+ +   KNLDT    KH+ +  ++L
Sbjct: 47  LLEQNKDLQTKNEFLEESVNKNLDTIVQLKHELNQRIEL 85


>U88180-10|AAO21403.1|  532|Caenorhabditis elegans Hypothetical
           protein T27A3.1e protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 VLKMRSDLREKHLFVRKEFVKNLDTRTLSKHDRDVELKL 371
           +L+   DL+ K+ F+ +   KNLDT    KH+ +  ++L
Sbjct: 88  LLEQNKDLQTKNEFLEESVNKNLDTIVQLKHELNQRIEL 126


>U88180-9|AAM22071.1|  517|Caenorhabditis elegans Hypothetical
           protein T27A3.1b protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 VLKMRSDLREKHLFVRKEFVKNLDTRTLSKHDRDVELKL 371
           +L+   DL+ K+ F+ +   KNLDT    KH+ +  ++L
Sbjct: 88  LLEQNKDLQTKNEFLEESVNKNLDTIVQLKHELNQRIEL 126


>U88180-8|AAB42296.1|  607|Caenorhabditis elegans Hypothetical
           protein T27A3.1a protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 VLKMRSDLREKHLFVRKEFVKNLDTRTLSKHDRDVELKL 371
           +L+   DL+ K+ F+ +   KNLDT    KH+ +  ++L
Sbjct: 88  LLEQNKDLQTKNEFLEESVNKNLDTIVQLKHELNQRIEL 126


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -3

Query: 479 ELDDASESLYWTARIIRSEQDSIENLDGCHYLLF 378
           +++D  +++++  ++I  +  +  +LD CHY LF
Sbjct: 860 KVEDDLQTIWFRRKLISKDTKTDVSLDECHYFLF 893


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,058
Number of Sequences: 27780
Number of extensions: 254293
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)