Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0487
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   0.39 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   3.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 171 VAF*LFCW*SLRSVLSYDSYRYDMTHSRVLKMRSDLREKHLFVRKEFVKNLDTRTLSK 344
           VAF    +   + V++  S   D+   RVL ++ +L    + V   F KN  T  L+K
Sbjct: 467 VAFKSLSYLKKQPVIANGSLEVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVTVNLTK 524


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -3

Query: 476 LDDASESLYWTARIIRSEQDSIENLDGCHYLLFRRQFKFYISIVFGERSSI 324
           LDD     Y     +   + SI N+DG      +   +  IS V G  SS+
Sbjct: 172 LDDCDNDTYGLEMSVDFIKGSISNIDGAEDHCNKTAVRKVISGVVGAASSV 222


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 207 ILSFTNKIIRKQPLVKCFSK 148
           ++S  N  IR   LVKCF K
Sbjct: 106 VISDANIYIRFNKLVKCFGK 125


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 207 ILSFTNKIIRKQPLVKCFSK 148
           ++S  N  IR   LVKCF K
Sbjct: 106 VISDANIYIRFNKLVKCFGK 125


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 467 RHPTRTLEQCYFLFAIIWLAFYS 535
           R  T+TL     +F I WL F++
Sbjct: 615 RKATKTLAIVLGVFLICWLPFFT 637


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 432 YYSCCP 449
           YYSCCP
Sbjct: 192 YYSCCP 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,750
Number of Sequences: 438
Number of extensions: 3453
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)