Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0487
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01470.1 68418.m00060 expressed protein                             28   6.7  
At3g47790.1 68416.m05206 ABC transporter family protein contains...    28   6.7  

>At5g01470.1 68418.m00060 expressed protein
          Length = 241

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 228 YRYDMTHSRVLKMRSDLREKHLFVRKEFVKNLDTRTLSKHDRDVE 362
           +RY +   R L++ S      +F++KEF  NLD  T   +D+++E
Sbjct: 71  HRYLIERRRCLEIGSGTGALAIFLKKEF--NLDITTSDYNDQEIE 113


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 578 TIIMYVYFFRNRFSVIWQYYYSLTTPLF--GWIL 673
           T+I Y+Y F      I+ + + L  PLF  GWI+
Sbjct: 429 TVIAYIYVFGTGLLGIFLFQFFLEDPLFPRGWII 462


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,117
Number of Sequences: 28952
Number of extensions: 225933
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)