Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0482
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    29   0.38 
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   6.2  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   6.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.1  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   8.1  

>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 115 RRFKEVEALRGGRLLICAIMSRYYHPAISSKLPIDT 222
           R+ KE+EA + G++   +  +RY  PAISSK PI T
Sbjct: 144 RKEKELEASKDGKIKPSSSNTRY--PAISSKGPITT 177


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 549 PKSHNENCNV*FHMSFKNDS*IPRFLHAL*LFSPYRCVSITHYTKGNPIWDWPIHI 382
           P S  E   V    S+K DS +P+ +  L +   YR  SI     G P+   P HI
Sbjct: 510 PSSGIEKPTVKRFESYKRDSQLPQAIGELRILVDYRAQSIILPIFGRPV---PFHI 562


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +1

Query: 25  VKVNGKLTKYS--HTWPLRAIK 84
           V+ NGK   +S  HTWP+RA +
Sbjct: 202 VEFNGKKHSFSMLHTWPVRAAR 223


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 551 VLSHIMKIVMFNFICLSKMILEYQDF---CMHYDYS 453
           V+S +   V+    CL++  L Y DF     HY+Y+
Sbjct: 578 VISLVAFFVIVQIFCLARWNLGYNDFGPSAFHYNYN 613


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 198 LVKVTDRYFMFFALSNERLISFLTTGIRFV 287
           L+  T RY   + L  + L+  L TG+++V
Sbjct: 584 LLVATQRYVRIYNLVKQELVKTLLTGVKWV 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,352
Number of Sequences: 5004
Number of extensions: 47321
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)