Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0482
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF101315-2|AAC69228.1|  990|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
 Frame = +3

Query: 30  SQWKTYQIFTYVAVEGDKDL*LNNTLIISQIQGS*SFTRRAAPYLRNNVSLLPSR----N 197
           S++KT + + + +  GD D+ + +    S+   S +FT+ +     N    LPS     N
Sbjct: 163 SEYKTEKWY-FTSQSGDNDICMQHGYFGSESFSSFTFTKVSLDVKLNEKLKLPSENIKLN 221

Query: 198 LVKVTDRYFMFFALSNER-----LISFLTTGIRFVYYICK*RAYCS 320
           L+K+ ++  +   L  E+     L++   T     Y++ K   YCS
Sbjct: 222 LMKLANQVQLVMTLIIEKSTFPTLLALRDTSKDLRYFVVKNGLYCS 267


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
 Frame = +3

Query: 30  SQWKTYQIFTYVAVEGDKDL*LNNTLIISQIQGS*SFTRRAAPYLRNNVSLLPSR----N 197
           S++KT + + + +  GD D+ + +    S+   S +FT+ +     N    LPS     N
Sbjct: 163 SEYKTEKWY-FTSQSGDNDICMQHGYFGSESFSSFTFTKVSLDVKLNEKLKLPSENIKLN 221

Query: 198 LVKVTDRYFMFFALSNER-----LISFLTTGIRFVYYICK*RAYCS 320
           L+K+ ++  +   L  E+     L++   T     Y++ K   YCS
Sbjct: 222 LMKLANQVQLVMTLIIEKSTFPTLLALRDTSKDLRYFVVKNGLYCS 267


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 159 YLRNNVSLLPSRNLVKVTDRYFMFFALSNERLI 257
           YLRN+ S++      K+TD  F    LS E  I
Sbjct: 298 YLRNDDSMIDDAETAKMTDEAFTRIGLSEEEKI 330


>AF101315-2|AAC69228.1|  990|Caenorhabditis elegans Hypothetical
           protein T22H9.3 protein.
          Length = 990

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 176 DIIAQIRSRPPRKASTSLNLRNNQSIIES 90
           D+ A  R  PP  +STSL  R++ SIIE+
Sbjct: 32  DVPATKRPAPPLTSSTSLPTRDSFSIIET 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,547
Number of Sequences: 27780
Number of extensions: 260964
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)