Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0482
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.7  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   1.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.9  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SRQSYRSILYVLCLVKRKINFVFDNR 274
           +R+    I + LCL +R+I   F NR
Sbjct: 34  TRRRRIEIAHALCLTERQIKIWFQNR 59


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SRQSYRSILYVLCLVKRKINFVFDNR 274
           +R+    I + LCL +R+I   F NR
Sbjct: 34  TRRRRIEIAHALCLTERQIKIWFQNR 59


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SRQSYRSILYVLCLVKRKINFVFDNR 274
           +R+    I + LCL +R+I   F NR
Sbjct: 34  TRRRRIEIAHALCLTERQIKIWFQNR 59


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197 SRQSYRSILYVLCLVKRKINFVFDNR 274
           +R+    I + LCL +R+I   F NR
Sbjct: 296 TRRRRIEIAHALCLTERQIKIWFQNR 321


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 151 RLLICAIMSRYYHPAISSKLPIDTLCSLPCQ 243
           RL + AI  +  HP      P +++CSLPC+
Sbjct: 567 RLNMSAIQFKLGHPE-----PPESVCSLPCE 592


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 86  FMTQ*YFDYFADSRKLKLYEA 148
           F+T   FDY  D+ +++++ A
Sbjct: 193 FLTSCSFDYLTDTNEIRIFVA 213


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 381 IL*LFIFDCGLAVPLPLLTIKSSM 310
           I+ L IFD  +A  +P+L I S M
Sbjct: 96  IVSLAIFDIIMAFEMPMLVISSFM 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 381 IL*LFIFDCGLAVPLPLLTIKSSM 310
           I+ L IFD  +A  +P+L I S M
Sbjct: 96  IVSLAIFDIIMAFEMPMLVISSFM 119


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 253 NLSFDKAKNIKYRSVT 206
           NLSFDK   +K  +VT
Sbjct: 374 NLSFDKQSLLKENTVT 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,496
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)