Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0481
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    32   0.074
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    29   0.69 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   6.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.5  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = +3

Query: 6   PPPQPDRAGRRARTHHS*YPHDLTSQQRHDRVARRRPMFTGVHVPMGVR 152
           PPPQ D  GRR  T    Y   L   +RH  + R   M  G   P   R
Sbjct: 134 PPPQYDNHGRRLNTREIRYKKKL-EDERHRIIERAMKMVPGFRAPSDYR 181


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 333 IPINFDSIDDINSGLLTSNVNFEPAGTEQKQHS 431
           +PI+  S+ D     LT+N  F+P  + Q  HS
Sbjct: 734 VPIDLSSMQDDQVSSLTTNEEFDPLSSFQASHS 766


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 321 NFDYIPINFDSIDDINS 371
           NF YIP+  + +D+INS
Sbjct: 279 NFKYIPLTKEDMDEINS 295


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 264 KVFFFMFSGCLDWSGLLTRTDNN 196
           K+ +   SGCL W  L TRT  N
Sbjct: 27  KIIYLWASGCLLWYCLETRTFEN 49


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 291 TTVAPA-TDSKNFDYIPINFDSIDDINSGLLTSNVNFE 401
           ++VAP   D+ NFD +  N  + D+  S +LT+N  F+
Sbjct: 111 SSVAPFFLDTTNFDRLNDNITTDDEQLSPVLTANQGFQ 148


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 525 PSFLTSPLHHSNNKRIRI 472
           P   +SP+HH+NN  +R+
Sbjct: 899 PRASSSPIHHANNNGLRL 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,982
Number of Sequences: 5004
Number of extensions: 44148
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)