Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0481
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 29 2.8
08_01_0197 + 1623454-1624566 29 3.7
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 28 5.0
07_03_1102 - 23981362-23982219 28 5.0
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 28 5.0
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 28 6.5
05_06_0170 - 26124178-26124670,26124699-26124703 28 6.5
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 24 9.6
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 90 HDRVARRRPMFTGVHVPMGVR*CGTDHKTTTGRRICYCQFGSTARSSQG 236
H R RR P G+ +P+G+ C D RR CY F A +S G
Sbjct: 375 HPRAKRRSPTPPGL-IPVGLPTCNPDLIEVEDRRCCYHGFAG-ADASHG 421
>08_01_0197 + 1623454-1624566
Length = 370
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 142 WASADVELITKPRPGEEYVIVSSGQQPAPVKASAKHE 252
WA DV LI + +PG+ + + P P ++S+ E
Sbjct: 80 WALVDVNLINQLQPGQPRQLFTKTDVPTPFRSSSFQE 116
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = +1
Query: 19 PIEPGAERALTTPNTRTTSR------HNNDMTAWPAVALCLLVCTSQWASADVELITKPR 180
P+ A TT +T TT+ N+ T P V QW S + ++
Sbjct: 98 PLGVDASTTTTTNSTTTTATAARRRSSNHTYTLGPKVTRWNAK-RRQWLSRNPGFPSRDA 156
Query: 181 PGEEYVIVSSGQQPAPVKASAKHEKKYLISTDKNR 285
G+ +++ +G QPAP +A YL+ KN+
Sbjct: 157 RGKPRILLVTGSQPAPCDDAAGDH--YLLKATKNK 189
>07_03_1102 - 23981362-23982219
Length = 285
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 3 HPPPQPDRAGRRARTHHS*YPHDLTSQQRHDRVARR 110
HPPPQ + RR+ + Y H S Q R RR
Sbjct: 123 HPPPQQQQQPRRSLSSSLFYAHPSPSPQLRTRPPRR 158
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 212 PELTITYSSPGRGFVISSTSADAHWDVHTSKHRAT 108
P+ + + PG G V+S+ ++D + +HTS R T
Sbjct: 157 PDSFLAATRPGGGRVLSTATSDLTFAIHTSPFRFT 191
>09_04_0130 -
14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 12 PQPDRAGRRARTHHS*YPHDLTSQQRHDRVARRRPMFTGVHVPMGVR*CGTDHKTTTGRR 191
P P R RAR + PH + + R +R+A R + VP + TD +
Sbjct: 243 PAPPRQRVRARRGQATDPHSIAERLRRERIAERMKALQEL-VPNANKLMQTDKASMLDEI 301
Query: 192 ICYCQF 209
I Y +F
Sbjct: 302 IDYVKF 307
>05_06_0170 - 26124178-26124670,26124699-26124703
Length = 165
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 172 KPRPGEEYVIVSSGQQPAPVKASAKHEKKYLISTDKNRC 288
K R +VS + P P +ASA+H++ L++ C
Sbjct: 46 KKRQQSSPTMVSMSESPEPEEASAQHQESALVALTARLC 84
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 24.2 bits (50), Expect(2) = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 33 RRARTHHS*YPHDLTSQQRHDRVAR 107
R A HH +PH + + RHD AR
Sbjct: 46 RVAHHHHGRHPHPPSPRWRHDVRAR 70
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 6 PPPQPDRAGRRAR 44
PPP P R GR R
Sbjct: 15 PPPPPHRRGRPPR 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,778,506
Number of Sequences: 37544
Number of extensions: 322740
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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