Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0481
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18308| Best HMM Match : TIL (HMM E-Value=4)                         28   5.1  
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.8  
SB_53845| Best HMM Match : WGR (HMM E-Value=4.2)                       27   8.8  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   27   8.8  

>SB_18308| Best HMM Match : TIL (HMM E-Value=4)
          Length = 146

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 106 AVALCLLVCTSQWASADVELITKPRPGEEYVIVSSGQQPAPVKASAKHEKKYLISTDKNR 285
           AV LC+ +C + W   +  +  + R   +Y   +S  Q    K  AK + + L   D+  
Sbjct: 73  AVVLCIQLCNASWLD-ERAMTQEKRCNGKYQKCTSNSQCCDQKDYAKRKLRCLTQCDEGG 131

Query: 286 C 288
           C
Sbjct: 132 C 132


>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 591  PRP*EL*TKGSESGRSPLSLFFPSFLTSPLHHSNNKRIRIHS 466
            PRP  L   G++SG    S FF S   S  + ++N R+ +H+
Sbjct: 948  PRPECLKAIGAQSGTLKDSQFFASSELSSSYRASNARLHLHT 989


>SB_53845| Best HMM Match : WGR (HMM E-Value=4.2)
          Length = 201

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 251 SC-LADALTGA--GC*PELTI-TYSSPGRGFVISSTSADAH 141
           SC + D LT    GC P   I +Y   GRG V+S T  D H
Sbjct: 69  SCNVVDGLTSTTVGCLPNKCIKSYDPRGRGPVVSCTMTDQH 109


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +3

Query: 348  DSIDDINSGLLTSNVNFEPAGTEQKQ------HSRIQIKK 449
            DS+ D  + L TSN N+E +  E+K+      HS  Q+KK
Sbjct: 2941 DSLTDAKNQLTTSNNNYEGSERERKRLMEELIHSEEQVKK 2980


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = -3

Query: 246  FSGCLDWSGLLTRTDN-NIFFARSWFCDQ--FHISGRPLGRAHQ*T*GDGGPRGHVVVVT 76
            F G ++ S LL RT   NI F  +   D   + +S  P GR H    G  G  G      
Sbjct: 2524 FGGTMEGSYLLIRTPLLNIAFNGTLRADGLGYQVSQGP-GRGHALEGGSYGGCG------ 2576

Query: 75   *GRAGIRSGECALGARLYRAAEGG 4
             G  GI  GEC L   LYRA E G
Sbjct: 2577 -GGQGI--GECTLYGTLYRAMEYG 2597


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,035,449
Number of Sequences: 59808
Number of extensions: 365999
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)