Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0481
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein...    29   3.4  
Z81568-2|CAB04590.1|  276|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeri...    28   4.5  
AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, al...    28   4.5  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -2

Query: 448 FLIWILECCFCSVPAGSKLTFDV-----NRPLFISSI 353
           FL+  L    C+V  GS+L FDV     NRPLF  S+
Sbjct: 37  FLLLSLHFVACTVDVGSRLVFDVPSEILNRPLFRLSV 73


>Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical
           protein C03C11.2 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 276 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGL 377
           +KPLLT    A +  N  Y P+  +  DDIN+ L
Sbjct: 153 KKPLLTNDKAALEMVNTMYSPLAREKCDDINANL 186


>AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein
           protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 276 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGL 377
           +KPLLT    A +  N  Y P+  +  DDIN+ L
Sbjct: 153 KKPLLTNDKAALEMVNTMYSPLAREKCDDINANL 186


>Z81568-2|CAB04590.1|  276|Caenorhabditis elegans Hypothetical
           protein K08E3.2 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 109 VALCLLV---CTSQWASADVELITKPRPGEEYVIVSSGQQPAPVKASAKHEKKYLISTDK 279
           ++LC L+   CTS+ A+  V  I   +  E        + PAPV  S   EK   +   K
Sbjct: 11  ISLCSLILGQCTSKKAAPSVAPIKMEKHAESLTATPVSKSPAPVSKSLALEKDEDVEKKK 70

Query: 280 NR 285
            +
Sbjct: 71  EK 72


>AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 276 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNF 398
           +KPL T +  ATD++N D +   FDS  D+   +    V F
Sbjct: 325 EKPLYTHITNATDTRNIDRV---FDSCMDVIFKISMEKVGF 362


>AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, alpha
           subunit protein 11 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 276 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNF 398
           +KPL T +  ATD++N D +   FDS  D+   +    V F
Sbjct: 325 EKPLYTHITNATDTRNIDRV---FDSCMDVIFKISMEKVGF 362


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
           protein F40F11.2b protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 321 NFDYIPINFDSIDDINSGLLTSNVNFEPAGTEQKQHSRIQIKKGPNG 461
           N+D+   N D+I   + G L+ + +F+ AGT ++  S   ++  PNG
Sbjct: 27  NYDFESGNIDNIPLNDDGPLSPSQDFDLAGTLEEYES-YDLRLSPNG 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,104,459
Number of Sequences: 27780
Number of extensions: 268154
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)