Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0481
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.00 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 276 QKPLLTTVAPATDSKNFDYIPINFD 350
           + P++  V  ATD+ NFD  P + D
Sbjct: 640 EPPIMPRVQNATDTTNFDEYPPDSD 664


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 570 TKGSESGRSPLSLFFPSFL 514
           T G+E  R P +LF PSFL
Sbjct: 24  TIGNERFRCPEALFQPSFL 42


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  MTAWPAVALCLLVCTS 138
           +T W AV +   +CTS
Sbjct: 132 ITGWSAVVITAAICTS 147


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 N*SQNHDRAKNMLLSVRVN 217
           N +QN D AKN ++  R N
Sbjct: 416 NIAQNIDHAKNTIIDYRNN 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,461
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)