Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0481
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    30   1.4  
At2g27900.1 68415.m03382 expressed protein                             28   4.1  
At4g17410.1 68417.m02607 expressed protein                             27   9.6  

>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 176 HDRAKNMLLSVRVNSPLQSRHPLNMKKNTL*AQTKTVAHYCSTRNG 313
           H+R  ++  S  +  P   RHPL ++ N     T    H C    G
Sbjct: 158 HERCASVFDSPEITHPSHVRHPLKLRSNGAPDYTNLNCHICGDATG 203


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 40  RALTTPNTRTTSRH---NNDMTAWPAVALCLLVCTSQWA 147
           R+ T   +RT+S H   N+D+TA    +LCLL    ++A
Sbjct: 744 RSFTRSQSRTSSSHFSTNDDLTAQTGSSLCLLRSMDKYA 782


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 73  SRHNNDMTAWPAVALCLLVCTSQWASADVELITKPRPGEEYVIVSSGQQPAPV 231
           S +N   T  P++ +  +  TS WASA++  + KP      +  SS  + A V
Sbjct: 315 SNNNETSTLKPSIEIAEI--TSAWASAEIVKVEKPVDASANIQGSSNGKEAAV 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,615
Number of Sequences: 28952
Number of extensions: 244614
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)