Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0479
         (420 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   1.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   3.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   4.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   8.5  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 244 PPPPTPRTACVERRTP 197
           PP P PR   V RR P
Sbjct: 250 PPTPKPRPTKVSRRKP 265


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 216 QAVLGVGGGGIQNSLLRPAAAS 281
           + ++ +GG    N++L P AAS
Sbjct: 97  KTIISIGGWNAGNAILAPIAAS 118


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97   VEQAVRDIIIKKIKKCAESITEPAEE 174
            V    R++ +KK KK  E   + AEE
Sbjct: 1057 VSWGTREVAVKKTKKELEEEKKQAEE 1082


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97   VEQAVRDIIIKKIKKCAESITEPAEE 174
            V    R++ +KK KK  E   + AEE
Sbjct: 1057 VSWGTREVAVKKTKKELEEEKKQAEE 1082


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97   VEQAVRDIIIKKIKKCAESITEPAEE 174
            V    R++ +KK KK  E   + AEE
Sbjct: 1057 VSWGTREVAVKKTKKELEEEKKQAEE 1082


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97   VEQAVRDIIIKKIKKCAESITEPAEE 174
            V    R++ +KK KK  E   + AEE
Sbjct: 1057 VSWGTREVAVKKTKKELEEEKKQAEE 1082


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = -3

Query: 244 PPPPTPRTACVERRTPAGSWAAAPLRRAR 158
           PP P     C+    P+G      +R+ R
Sbjct: 97  PPSPKDDEKCLSLERPSGGGKGKKMRKPR 125


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 343 SSAPAVAPPTGPDCV 299
           SS+P  + PTGP  V
Sbjct: 91  SSSPQTSAPTGPPIV 105


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -3

Query: 313 GPDCVLSESDTLAAAGRSREFCIPPP 236
           GPD  L            R +CI PP
Sbjct: 317 GPDAGLGNLSVCIDQQPWRSYCIQPP 342


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,081
Number of Sequences: 336
Number of extensions: 1778
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)