Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0479
(420 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 28 0.51
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 28 0.51
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 0.68
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy... 27 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 2.1
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.6
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 4.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 4.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 4.8
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 6.3
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 25 6.3
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 24 8.4
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 24 8.4
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 24 8.4
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 28.3 bits (60), Expect = 0.51
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 292 ESDTLAAAGRSREFCIPPPPTP 227
E DT AAA ++ ++ I PPP+P
Sbjct: 16 EKDTCAAAIKAYQYLISPPPSP 37
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 0.51
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 377 SLDLGGLAGLVFVRARRGSAHRPRLRA-LRVRHTGGGGAKQGILYPSPSHSEN 222
+L + LAG + GS ++P LRA + H G +G + P PS EN
Sbjct: 47 ALQMLDLAGRPDIPVYAGS-NKPLLRAPITATHVHGASGFEGAVLPPPSRKEN 98
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 0.68
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 367 LAGLLGLCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTPRTACVERRTPA 194
+ G L + +AP++AP P S + A + S +PPPP TA + PA
Sbjct: 867 MLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPP--TASMTASAPA 922
>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 102
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 240 GGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPS 356
GG ++ + R AA + ES SGP G AGA P+
Sbjct: 19 GGPKSQIRRRAAVEKNTKESN-SGPAGARAAGAPGSTPT 56
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.6
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -3
Query: 343 SSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTPRTACVERRTP 197
S++ PP P + S L GRS PPPP PR+A R P
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSA----PPPPPPRSAPSTGRQP 376
Score = 25.0 bits (52), Expect = 4.8
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -3
Query: 391 ALKGRVLILAGLLGLCSSAPAVAPPTGPDCVLSESDTLA-AAGRSREFCIPP-PPTPRTA 218
A+ GR LG S PT P S +L +A S P PP P +A
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 217 CVERRTPAGSWAAAPL 170
+ PAG AA PL
Sbjct: 454 PIAPPLPAGMPAAPPL 469
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 2.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 234 PLREQLV*SEGRQLDHGQRLLFGGLGDALSTFLDLFDDDVSDG-LLDGRAA 85
P E+L G+ D F G+AL+ L DD++ DG +DG+ A
Sbjct: 342 PSDEELGKELGKYKDKLDEQTFKAKGNALTMAAPLPDDEIEDGETMDGQKA 392
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 67 ENKLLARSAAVEQAVRDIIIKKIKKCAESITEPAEEEPLPMIQLASFALHKLFSEWEGEG 246
+N+L+A + +E +R I ++K ++I + + I + F L L EW+ +G
Sbjct: 270 KNELIAHNDPMEIEMRGCSIWAVEKILQNINR----KDVNAITI-DFFLWDLAKEWQAKG 324
Query: 247 YK 252
YK
Sbjct: 325 YK 326
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 189 HGQRLLFGGLGDALSTFLDLFDDDVSDGLL 100
HG R +FG D L+ F ++ DG+L
Sbjct: 460 HGTRTIFGAFKDLLNCFRRYILNNFFDGML 489
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 298 LSESDTLAAAGRSREFCIPPPPTPRTACVERR 203
+S+ A S+ +PPPP P A VE++
Sbjct: 1077 ISKPSAPVANNVSKPSAVPPPPPPPPAEVEKK 1108
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 4.8
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 322 PPTGPDCVLSESDTL-AAAGRSREFCIPPPPT-PRTACVERRTPAGSWAAA 176
P G V + + T AAA + + PPPP P+ A TP + AA
Sbjct: 339 PSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAA 389
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 24.6 bits (51), Expect = 6.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 195 AGVLRSTQAVLGVGGGGI 248
+GVLR+ + +LG+G G +
Sbjct: 8 SGVLRNRKVILGIGAGSL 25
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 98 TAALRASSLFSPYPWYTVPSMVRSAQY 18
TAA+R S S Y YT+P + QY
Sbjct: 47 TAAIRDLSEASVYSEYTIPKLYIKLQY 73
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 403 CMVLALKGRVLILAGLLGLC 344
C +LAL G++L++ + LC
Sbjct: 99 CRILALNGKILLIRPKIWLC 118
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 137 LIFLMMMSLTACSTAALRASSL 72
L+F ++M+LTA AA A S+
Sbjct: 8 LVFFLVMTLTAADKAAFDAESM 29
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 180 RLLFGGLGDALSTFLD 133
R L G+GDALST+++
Sbjct: 224 RFLISGIGDALSTWVE 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,108
Number of Sequences: 5004
Number of extensions: 27905
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -