Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0479
(420 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097) 31 0.39
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 31 0.51
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 29 1.2
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.4
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_44419| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_31858| Best HMM Match : I-set (HMM E-Value=3.7e-08) 27 4.8
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_4472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 27 8.3
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 8.3
SB_1067| Best HMM Match : Trigger_C (HMM E-Value=0.73) 27 8.3
SB_10734| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 23 9.0
SB_18355| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 23 10.0
>SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)
Length = 498
Score = 31.1 bits (67), Expect = 0.39
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 192 PAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAKI 371
P G L+ Q + G S + S S S S P A +D+H PSKP +
Sbjct: 190 PRGALKKPQTLETAGADASNGSSAAASPDSGLASFSAGSDPKVSAPGNSDDHSPSKPIPV 249
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 30.7 bits (66), Expect = 0.51
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 337 APAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTPRTA---CVERRTPAGS 188
AP P+G D + + A +S E I P PTP T+ C +P GS
Sbjct: 185 APRPTLPSGDDARSPPNGQIHKASQSTEHSIHPEPTPSTSREECTRDASPMGS 237
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 28 DLTIDGTVYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESITEPAEEEPLP 186
DLT+ T E + + A EQA + + ++ K E +T+P EE P
Sbjct: 157 DLTVGETNQDAQQEAPVYENAKAEEQAESETVQQEATKTEEEVTKPEEEANKP 209
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 25.8 bits (54), Expect(2) = 3.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 394 LALKGRVLILAGLLGLCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227
L + R+++L + +C+ A ++ C +S T A C PPPP P
Sbjct: 54 LIMDKRIVLLVLAVAVCTEAKSLKGDK--KCDVSCMPTSCAPACPPACCAPPPPPP 107
Score = 20.6 bits (41), Expect(2) = 3.4
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -3
Query: 244 PPPPTPRTACV 212
PPPP P C+
Sbjct: 140 PPPPPPPAPCM 150
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 299 ALRVRHTGGGGAKQGILYPSPSHSENSLCRAKDAS 195
A+RV GGGG +QGI P+ S R S
Sbjct: 323 AVRVAIKGGGGVQQGITNPNASQQNAFTARVSTPS 357
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 121 IIKKIKKCAESITEPAEEEPLPMIQLASFALHKLFSEWEGEGYKIPCFAPP 273
+I + + ES+ P ++EPLP +Q S E Y P FA P
Sbjct: 731 VIPLVSRKLESVYPPNKDEPLPKVQENSKVGDTPAPEIPPRNYSSPEFAEP 781
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 27.9 bits (59), Expect = 3.6
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +3
Query: 228 GVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAKIKTLPFNASTMHP 407
G+ G G NS L+P E T +G VG T G+ + TLP A T
Sbjct: 277 GLLGNGPSNSALQPTIGPQVYPEHTMAGSVGMDTQGSSQQ--------GTLPITAYTRPN 328
Query: 408 CML 416
C L
Sbjct: 329 CSL 331
>SB_44419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +1
Query: 19 YCADLTIDGTVYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAE----SITEPAEEEP 180
Y D TI T+ +G N A +A EQA D +KC E T+P+ EP
Sbjct: 85 YVYDTTISETIARGSSSNIRAAVNALSEQASADKFKLNERKCEELRIGFSTKPSNVEP 142
>SB_31858| Best HMM Match : I-set (HMM E-Value=3.7e-08)
Length = 229
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 107 ACSTAALRASSLFSPYPWYTVPSMVRSAQYVGVV 6
A + + A S PYPW T P ++ S+Q +V
Sbjct: 40 AAARRGVEAWSHSPPYPWQTRPDVMASSQIAQIV 73
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.1 bits (57), Expect = 6.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 79 LARSAAVEQAVRDIIIKKI-KKCAE-SITEPAEEEPLPMIQLASFALHKLFSEWEGEGYK 252
+ RS + + +++ +++ KK +E S +PA EPL +IQ SE E
Sbjct: 1034 VVRSESTAEQEKEVFFEELFKKMSEDSPVKPASSEPLEVIQQDVLPPPPPVSEDEVFTAL 1093
Query: 253 IPCFAPPPPV 282
PPPPV
Sbjct: 1094 EDSLPPPPPV 1103
>SB_4472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +1
Query: 67 ENKLLARSAAVEQAVRDIIIKKIKKCAESITEPAEEEPLPMIQLASFALHKLFSEWEGEG 246
E K+LA +E DI+ K K I A PLP ++ F +F + +G
Sbjct: 71 EQKVLALKPVLETRGYDIVNYK-KPFGYRIYPVANSLPLPPGKVGRFPFCDIFLMVKEDG 129
Query: 247 YKIPCFAPP 273
+PC P
Sbjct: 130 KYVPCHEKP 138
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 322 PPTGPDCVLSESDTLAAAGRSREFCIPPP 236
PPT P C +E A +S + C P P
Sbjct: 2790 PPTAPACEFAEKIIKAPTDKSADGCAPYP 2818
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 250 CIPPPPTPRTACVERRTPAGSWAAAPLRRAR*CSQH 143
C PP +P+TAC+ R P+ ++P RR + H
Sbjct: 115 CRSPPTSPKTACL-TRGPSEDNRSSPPRRPPPAAPH 149
>SB_1067| Best HMM Match : Trigger_C (HMM E-Value=0.73)
Length = 639
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 22 CADLTIDGTVYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESITE 162
CA IDG V Q E L A QA+ + ++ I +CA + +
Sbjct: 271 CALQAIDGCVLQAIDECALQAIDECALQAIDERALQAIDECALQVID 317
>SB_10734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 189 DPAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAK 368
DPAG+ +Q+ + +QN L+P A+ ++ Q G PSK K
Sbjct: 19 DPAGIYGQSQSQIVEQPNEVQNPPLQPLQANQQVPQNNQQANKQQLDKGGKAPAPSKAKK 78
Query: 369 IKT 377
++
Sbjct: 79 TES 81
>SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 189 DPAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAK 368
DPAG+ +Q+ + +QN L+P A+ ++ Q G PSK K
Sbjct: 19 DPAGIYGQSQSQIVEQPNEVQNPPLQPLQANQQVPQNNQQANKQQLDKGGKAPAPSKAKK 78
Query: 369 IKT 377
++
Sbjct: 79 TES 81
>SB_1225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 189 DPAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAK 368
DPAG+ +Q+ + +QN L+P A+ ++ Q G PSK K
Sbjct: 19 DPAGIYGQSQSQIVEQPNEVQNPPLQPLQANQQVPQNNQQANKQQLDKGGKAPAPSKAKK 78
Query: 369 IKT 377
++
Sbjct: 79 TES 81
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 334 PAVAPPTGPDCVLSESDTLAAAGRSREFCIP 242
P + PPT P SES +LA S +C P
Sbjct: 781 PPIPPPTPPPQRRSESRSLATLQPSLVYCTP 811
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 22.6 bits (46), Expect(2) = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 298 LSESDTLAAAGRSREFCIPP 239
LSES ++A E+C PP
Sbjct: 152 LSESQNSSSASSEPEYCPPP 171
Score = 22.2 bits (45), Expect(2) = 9.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 244 PPPPTPRTACVERRTPAGS 188
PPPP + ER P GS
Sbjct: 182 PPPPARNQSGKERAQPIGS 200
>SB_18355| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 247
Score = 22.6 bits (46), Expect(2) = 10.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 298 LSESDTLAAAGRSREFCIPP 239
LSES ++A E+C PP
Sbjct: 47 LSESQNSSSASSEPEYCPPP 66
Score = 22.2 bits (45), Expect(2) = 10.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 244 PPPPTPRTACVERRTPAGS 188
PPPP + ER P GS
Sbjct: 77 PPPPARNQSGKERAQPIGS 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,168
Number of Sequences: 59808
Number of extensions: 264119
Number of successful extensions: 1086
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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