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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0479
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote...    32   0.14 
At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family prote...    32   0.18 
At1g71910.1 68414.m08313 expressed protein                             30   0.73 
At4g39470.1 68417.m05584 chloroplast lumen common family protein       29   1.3  
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s...    29   1.7  
At3g15040.1 68416.m01903 expressed protein contains Pfam profile...    29   1.7  
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    28   2.2  
At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo...    28   3.0  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    27   3.9  
At4g12720.3 68417.m01998 MutT/nudix family protein similar to SP...    27   3.9  
At4g12720.2 68417.m01997 MutT/nudix family protein similar to SP...    27   3.9  
At4g12720.1 68417.m01996 MutT/nudix family protein similar to SP...    27   3.9  
At3g18170.1 68416.m02312 expressed protein contains Pfam domain,...    27   3.9  
At2g27535.1 68415.m03334 ribosomal protein L10A family protein c...    27   3.9  
At1g31660.1 68414.m03887 bystin family contains Pfam profile: PF...    27   3.9  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    27   5.2  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    27   5.2  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    27   6.8  
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    27   6.8  
At5g25170.1 68418.m02984 expressed protein                             27   6.8  
At5g24580.2 68418.m02903 copper-binding family protein similar t...    27   6.8  
At5g24580.1 68418.m02902 copper-binding family protein similar t...    27   6.8  
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa...    27   6.8  
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa...    27   6.8  
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa...    27   6.8  
At1g59940.1 68414.m06752 two-component responsive regulator / re...    27   6.8  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    27   6.8  
At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 si...    26   9.0  
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    26   9.0  
At3g50130.1 68416.m05480 expressed protein ; expression supporte...    26   9.0  
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    26   9.0  

>At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 469

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -2

Query: 152 LSAHFLIFLMMMSLTACSTAALRASSLFSPYPWYTVPSMVRSAQYV 15
           L AH L  ++ ++L      A+++ +L +P P+Y+VP  V+  QYV
Sbjct: 259 LVAHSLGCILALALAVKHPGAIKSLTLLAP-PYYSVPKGVQGTQYV 303


>At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 471

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -2

Query: 146 AHFLIFLMMMSLTACSTAALRASSLFSPYPWYTVPSMVRSAQYV 15
           AH L  ++ ++L      A+++ +L +P P+Y VP  V+ AQYV
Sbjct: 269 AHSLGCILALALAVKHPGAIKSLTLLAP-PYYKVPKGVQPAQYV 311


>At1g71910.1 68414.m08313 expressed protein
          Length = 173

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 311 PRLRALRVRHTGGGGAKQGILYPSPSHSENSLCRAK 204
           PR ++LR+ H G GG K+  L+P  S +    C  K
Sbjct: 98  PRSQSLRIVHGGDGGEKKTALFPDESSAVAVGCGMK 133


>At4g39470.1 68417.m05584 chloroplast lumen common family protein
          Length = 341

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 418 SSMQGCMVLALKGRVLILAGL--LGLCSSAPAVAPPT 314
           SS     +LA K  +L++     LG CSS PA+A PT
Sbjct: 71  SSKDFVQMLARKAAILLVGSFVFLGFCSSKPALALPT 107


>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
           similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
           GI:6273457; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 572

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 148 ESITEPAEEEPLPMIQLASFALHKLFSEWEGEGY 249
           E I+ P +E+P P   + +   HKL   + G+GY
Sbjct: 496 EEISGPHKEDPAPTSFVPNAGYHKLIEAFGGKGY 529


>At3g15040.1 68416.m01903 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 243

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +3

Query: 264 RPAAA---SVSDSESTQSGPVGGATAGADEHKPSKPAKIK----TLPFNAS 395
           +PAAA   SVS + S+ S   GGA+AG+     + P   K     LPF+AS
Sbjct: 97  KPAAALSTSVSSTASSSSSSGGGASAGSSSSARAIPTAPKPPQERLPFSAS 147


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 237 GGGIQNSLLRPAAASVSDSESTQSGPV 317
           G G+  S + P+ +SVS  E++ SGPV
Sbjct: 72  GPGVSQSEVPPSKSSVSTDETSSSGPV 98


>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein
           contains InterPro accession IPR001757: ATPase, E1-E2
           type; contains Pfam profiles PF00403:
           Heavy-metal-associated domain, PF00702: haloacid
           dehalogenase-like hydrolase
          Length = 883

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 37  IDGTVYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESI 156
           + G    GY E ++L  +AAVE+     I K I   AES+
Sbjct: 560 VSGVASLGYEEQEVLKMAAAVEKTATHPIAKAIVNEAESL 599


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 225 LGVGGGGIQNSLLRPAAASVSDSESTQSGPVG 320
           LG+   GI    + P+ A  SD++ + +GP+G
Sbjct: 624 LGISPLGISPPNIEPSKADASDADPSNAGPLG 655


>At4g12720.3 68417.m01998 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 282

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 282 HWRRRGEAGNFVSLPLPLRE--QLV*SEGRQLDHGQ 181
           HWR  G+ G ++ LPL L    +   SEG +  H +
Sbjct: 44  HWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAE 79


>At4g12720.2 68417.m01997 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 282

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 282 HWRRRGEAGNFVSLPLPLRE--QLV*SEGRQLDHGQ 181
           HWR  G+ G ++ LPL L    +   SEG +  H +
Sbjct: 44  HWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAE 79


>At4g12720.1 68417.m01996 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 282

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 282 HWRRRGEAGNFVSLPLPLRE--QLV*SEGRQLDHGQ 181
           HWR  G+ G ++ LPL L    +   SEG +  H +
Sbjct: 44  HWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAE 79


>At3g18170.1 68416.m02312 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 384

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 195 AGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGA--TAGADEHKPSKPAK 368
           A  + S   +LGV G G+ N +  P  A V      Q  P+GG    A  D  KPS+   
Sbjct: 262 AQTVNSCDVMLGVHGAGLTNMVFLPENAVV-----IQVLPIGGFEWLAKTDFEKPSEGMN 316

Query: 369 IKTLPF 386
           ++ L +
Sbjct: 317 LRYLEY 322


>At2g27535.1 68415.m03334 ribosomal protein L10A family protein
           contains similarity to Swiss-Prot:P53029 ribosomal
           protein L10A [Arabidopsis thaliana]
          Length = 81

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 133 IKKCAESITEPAEEEPLPMIQLASFALHKLFSEWEGE 243
           +++   +IT P+EE  L M QL S +L +  +  EG+
Sbjct: 9   LREAIANITRPSEERKLKMRQLESESLREAIATIEGK 45


>At1g31660.1 68414.m03887 bystin family contains Pfam profile:
           PF05291 Bystin
          Length = 442

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 79  LARSAAVEQAVRDIIIKKIKKCAESITEPAEEEPLPMIQLASFALHK 219
           L ++A  ++ + DIIIKK+K     + E  EE P P +  A   L+K
Sbjct: 128 LNKNAPPQRTLTDIIIKKLKDKDADLAE--EERPDPKMDPAITKLYK 172


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 298 LSESDTLAAAGRSREFCIPPPPTPRTACVERRTPAGSWAAAPLRR 164
           +S +D + +        +PPPP P    + RR P       P+RR
Sbjct: 6   ISGADAVVSPPMRGRVPLPPPPPPPPPPMRRRAPLPPPPPPPMRR 50


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -3

Query: 340 SAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227
           S P   PP  P   ++   T   AG       PPPP P
Sbjct: 119 SPPPPPPPPPPPPTITPPVTTTTAGHHHHRRSPPPPPP 156


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 343 SSAPAVAPPTGPDCVLSESDTLAAAGRSR-EFCIPPPPTPRT 221
           S  P+ +PP  P  + S   T+A++         PPP TP T
Sbjct: 63  SPPPSSSPPPSPPVITSPPPTVASSPPPPVVIASPPPSTPAT 104


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 189 DPAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAK 368
           +PA ++ S Q +L +  G        P++  V   E++ S     +   AD  + + P K
Sbjct: 426 NPASIVSSDQVLLMLENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVADSKEVTVPTK 485

Query: 369 IKT 377
           +KT
Sbjct: 486 LKT 488


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 319 PTGPDCVLSESDTLAAAGRSREFCIPPPPT 230
           P GP    S S   +  G  R  C+PP PT
Sbjct: 186 PPGPSLSSSGSLNRSRRGERRRQCLPPSPT 215


>At5g24580.2 68418.m02903 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 318

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 49  VYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESIT--EPAEEEPLPMI 192
           V     EN++  +     QAV + I KK K+ A+ ++    AE EPLP I
Sbjct: 85  VVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMAKVLSPLPAAEGEPLPPI 134


>At5g24580.1 68418.m02902 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 319

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 49  VYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESIT--EPAEEEPLPMI 192
           V     EN++  +     QAV + I KK K+ A+ ++    AE EPLP I
Sbjct: 86  VVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMAKVLSPLPAAEGEPLPPI 135


>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
           PF03479: Domain of unknown function (DUF296); contains
           Pfam PF02178: AT hook motif;
          Length = 439

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = +3

Query: 228 GVGGGGIQNSLLRPAAASVSDSEST-----QSGPVGGATAGADEHKPSKPAK 368
           G GGGG  N  L  A  S   S S        G  GG +AGA+ +    PAK
Sbjct: 145 GGGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANSSDPPAK 196


>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 676

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 385 KGRVLILAGLLGLCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227
           K + + LA  L LC+  P       P   L+ ++TL+ A        P  PTP
Sbjct: 4   KWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLSPLNWPMTPTP 56


>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 675

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 385 KGRVLILAGLLGLCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227
           K + + LA  L LC+  P       P   L+ ++TL+ A        P  PTP
Sbjct: 4   KWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLSPLNWPMTPTP 56


>At1g59940.1 68414.m06752 two-component responsive regulator /
           response regulator 3 (ARR3) identical to response
           regulator 3 GI:3953595 from [Arabidopsis thaliana]
          Length = 231

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 298 LSESDTLAAAGRSREFCIPPPPTPRTA 218
           L+    +AA G  R+   PPPP P +A
Sbjct: 160 LTRDVKVAAEGNKRKLTTPPPPPPLSA 186


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 192 PAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQS 308
           P G+   T   LG GG G+    ++P     S+  +TQ+
Sbjct: 459 PLGISLPTLLSLGAGGWGVWKYFIKPRRHPESECSATQT 497


>At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17
           similar to beta-1,3-glucanase GI:6714534 from [Salix
           gilgiana]
          Length = 380

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 343 SSAPAVAPPTGPDCVL-SESDTLAAAGRSREFCIPPPPTPRTACVERRTPAGSWAAA 176
           SS  + +PPT P     S+S   +  G S   C+P  P P    V+++   G W  A
Sbjct: 240 SSIGSPSPPTIPYFPEPSQSPMESNQGISLPPCLPYHPAPSPQPVKKKNVEGLWCVA 296


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = -3

Query: 349 LCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTPRTACVERRTPAGSWAAAPL 170
           LC       P + P  +L  S    + GR     +PPP  P      +     SW   PL
Sbjct: 695 LCKIGQTQIPSSDPLPILRGS---GSGGREENTPLPPP-LPHQNLFIQEDEMSSWPHHPL 750

Query: 169 RRAR*CSQ 146
           R+   CS+
Sbjct: 751 RQDYLCSE 758


>At3g50130.1 68416.m05480 expressed protein ; expression supported
           by MPSS
          Length = 564

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 244 PPPPTPRTACVERRTPAGSWAAAPLRR 164
           PPPP P    + R  P  S+ + P RR
Sbjct: 12  PPPPPPSFRSIPRPPPPPSFRSIPPRR 38


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 237 GGGIQNSLLRPAAASVSDSES--TQSGPVGGATAGADEHKPSKPAKIKTLPFNAST 398
           G G Q    +P A S S S+   +QS   GG   GA   KP   +    LP ++S+
Sbjct: 252 GRGTQLQQPQPQAVSQSSSQGQVSQSFATGGVGLGAWARKPQLFSDSTVLPSSSSS 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,968,520
Number of Sequences: 28952
Number of extensions: 188326
Number of successful extensions: 963
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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