BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0479 (420 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family prote... 32 0.14 At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family prote... 32 0.18 At1g71910.1 68414.m08313 expressed protein 30 0.73 At4g39470.1 68417.m05584 chloroplast lumen common family protein 29 1.3 At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s... 29 1.7 At3g15040.1 68416.m01903 expressed protein contains Pfam profile... 29 1.7 At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 28 2.2 At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo... 28 3.0 At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 27 3.9 At4g12720.3 68417.m01998 MutT/nudix family protein similar to SP... 27 3.9 At4g12720.2 68417.m01997 MutT/nudix family protein similar to SP... 27 3.9 At4g12720.1 68417.m01996 MutT/nudix family protein similar to SP... 27 3.9 At3g18170.1 68416.m02312 expressed protein contains Pfam domain,... 27 3.9 At2g27535.1 68415.m03334 ribosomal protein L10A family protein c... 27 3.9 At1g31660.1 68414.m03887 bystin family contains Pfam profile: PF... 27 3.9 At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 27 5.2 At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 5.2 At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 6.8 At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 27 6.8 At5g25170.1 68418.m02984 expressed protein 27 6.8 At5g24580.2 68418.m02903 copper-binding family protein similar t... 27 6.8 At5g24580.1 68418.m02902 copper-binding family protein similar t... 27 6.8 At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa... 27 6.8 At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 27 6.8 At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 27 6.8 At1g59940.1 68414.m06752 two-component responsive regulator / re... 27 6.8 At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 27 6.8 At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 si... 26 9.0 At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 26 9.0 At3g50130.1 68416.m05480 expressed protein ; expression supporte... 26 9.0 At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 26 9.0 >At1g64670.1 68414.m07331 hydrolase, alpha/beta fold family protein low similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase [Pseudomonas putida] GI:2822275; contains Pfam profile PF00561: hydrolase, alpha/beta fold family Length = 469 Score = 32.3 bits (70), Expect = 0.14 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = -2 Query: 152 LSAHFLIFLMMMSLTACSTAALRASSLFSPYPWYTVPSMVRSAQYV 15 L AH L ++ ++L A+++ +L +P P+Y+VP V+ QYV Sbjct: 259 LVAHSLGCILALALAVKHPGAIKSLTLLAP-PYYSVPKGVQGTQYV 303 >At5g41900.1 68418.m05101 hydrolase, alpha/beta fold family protein low similarity to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase [Pseudomonas putida] GI:2822275; contains Pfam profile PF00561: hydrolase, alpha/beta fold family Length = 471 Score = 31.9 bits (69), Expect = 0.18 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = -2 Query: 146 AHFLIFLMMMSLTACSTAALRASSLFSPYPWYTVPSMVRSAQYV 15 AH L ++ ++L A+++ +L +P P+Y VP V+ AQYV Sbjct: 269 AHSLGCILALALAVKHPGAIKSLTLLAP-PYYKVPKGVQPAQYV 311 >At1g71910.1 68414.m08313 expressed protein Length = 173 Score = 29.9 bits (64), Expect = 0.73 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 311 PRLRALRVRHTGGGGAKQGILYPSPSHSENSLCRAK 204 PR ++LR+ H G GG K+ L+P S + C K Sbjct: 98 PRSQSLRIVHGGDGGEKKTALFPDESSAVAVGCGMK 133 >At4g39470.1 68417.m05584 chloroplast lumen common family protein Length = 341 Score = 29.1 bits (62), Expect = 1.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -3 Query: 418 SSMQGCMVLALKGRVLILAGL--LGLCSSAPAVAPPT 314 SS +LA K +L++ LG CSS PA+A PT Sbjct: 71 SSKDFVQMLARKAAILLVGSFVFLGFCSSKPALALPT 107 >At5g17380.1 68418.m02038 pyruvate decarboxylase family protein similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens] GI:6273457; contains InterPro entry IPR000399: Pyruvate decarboxylase Length = 572 Score = 28.7 bits (61), Expect = 1.7 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 148 ESITEPAEEEPLPMIQLASFALHKLFSEWEGEGY 249 E I+ P +E+P P + + HKL + G+GY Sbjct: 496 EEISGPHKEDPAPTSFVPNAGYHKLIEAFGGKGY 529 >At3g15040.1 68416.m01903 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584 Length = 243 Score = 28.7 bits (61), Expect = 1.7 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%) Frame = +3 Query: 264 RPAAA---SVSDSESTQSGPVGGATAGADEHKPSKPAKIK----TLPFNAS 395 +PAAA SVS + S+ S GGA+AG+ + P K LPF+AS Sbjct: 97 KPAAALSTSVSSTASSSSSSGGGASAGSSSSARAIPTAPKPPQERLPFSAS 147 >At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane domains; weak similarity to HPSR2 - heavy chain potential motor protein (GI:871048) [Giardia intestinalis] Length = 702 Score = 28.3 bits (60), Expect = 2.2 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 237 GGGIQNSLLRPAAASVSDSESTQSGPV 317 G G+ S + P+ +SVS E++ SGPV Sbjct: 72 GPGVSQSEVPPSKSSVSTDETSSSGPV 98 >At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein / heavy-metal-associated domain-containing protein contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profiles PF00403: Heavy-metal-associated domain, PF00702: haloacid dehalogenase-like hydrolase Length = 883 Score = 27.9 bits (59), Expect = 3.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 37 IDGTVYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESI 156 + G GY E ++L +AAVE+ I K I AES+ Sbjct: 560 VSGVASLGYEEQEVLKMAAAVEKTATHPIAKAIVNEAESL 599 >At5g07570.1 68418.m00867 glycine/proline-rich protein contains similarity to flagelliform silk protein [Nephila clavipes] gi|7106224|gb|AAF36090 Length = 1504 Score = 27.5 bits (58), Expect = 3.9 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 225 LGVGGGGIQNSLLRPAAASVSDSESTQSGPVG 320 LG+ GI + P+ A SD++ + +GP+G Sbjct: 624 LGISPLGISPPNIEPSKADASDADPSNAGPLG 655 >At4g12720.3 68417.m01998 MutT/nudix family protein similar to SP|P53370 Nucleoside diphosphate-linked moiety X motif 6 {Homo sapiens}; contains Pfam profile PF00293: NUDIX domain Length = 282 Score = 27.5 bits (58), Expect = 3.9 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -1 Query: 282 HWRRRGEAGNFVSLPLPLRE--QLV*SEGRQLDHGQ 181 HWR G+ G ++ LPL L + SEG + H + Sbjct: 44 HWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAE 79 >At4g12720.2 68417.m01997 MutT/nudix family protein similar to SP|P53370 Nucleoside diphosphate-linked moiety X motif 6 {Homo sapiens}; contains Pfam profile PF00293: NUDIX domain Length = 282 Score = 27.5 bits (58), Expect = 3.9 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -1 Query: 282 HWRRRGEAGNFVSLPLPLRE--QLV*SEGRQLDHGQ 181 HWR G+ G ++ LPL L + SEG + H + Sbjct: 44 HWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAE 79 >At4g12720.1 68417.m01996 MutT/nudix family protein similar to SP|P53370 Nucleoside diphosphate-linked moiety X motif 6 {Homo sapiens}; contains Pfam profile PF00293: NUDIX domain Length = 282 Score = 27.5 bits (58), Expect = 3.9 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -1 Query: 282 HWRRRGEAGNFVSLPLPLRE--QLV*SEGRQLDHGQ 181 HWR G+ G ++ LPL L + SEG + H + Sbjct: 44 HWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAE 79 >At3g18170.1 68416.m02312 expressed protein contains Pfam domain, PF04577: Protein of unknown function (DUF563) Length = 384 Score = 27.5 bits (58), Expect = 3.9 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +3 Query: 195 AGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGA--TAGADEHKPSKPAK 368 A + S +LGV G G+ N + P A V Q P+GG A D KPS+ Sbjct: 262 AQTVNSCDVMLGVHGAGLTNMVFLPENAVV-----IQVLPIGGFEWLAKTDFEKPSEGMN 316 Query: 369 IKTLPF 386 ++ L + Sbjct: 317 LRYLEY 322 >At2g27535.1 68415.m03334 ribosomal protein L10A family protein contains similarity to Swiss-Prot:P53029 ribosomal protein L10A [Arabidopsis thaliana] Length = 81 Score = 27.5 bits (58), Expect = 3.9 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 133 IKKCAESITEPAEEEPLPMIQLASFALHKLFSEWEGE 243 +++ +IT P+EE L M QL S +L + + EG+ Sbjct: 9 LREAIANITRPSEERKLKMRQLESESLREAIATIEGK 45 >At1g31660.1 68414.m03887 bystin family contains Pfam profile: PF05291 Bystin Length = 442 Score = 27.5 bits (58), Expect = 3.9 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +1 Query: 79 LARSAAVEQAVRDIIIKKIKKCAESITEPAEEEPLPMIQLASFALHK 219 L ++A ++ + DIIIKK+K + E EE P P + A L+K Sbjct: 128 LNKNAPPQRTLTDIIIKKLKDKDADLAE--EERPDPKMDPAITKLYK 172 >At5g07760.1 68418.m00888 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 853 Score = 27.1 bits (57), Expect = 5.2 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -3 Query: 298 LSESDTLAAAGRSREFCIPPPPTPRTACVERRTPAGSWAAAPLRR 164 +S +D + + +PPPP P + RR P P+RR Sbjct: 6 ISGADAVVSPPMRGRVPLPPPPPPPPPPMRRRAPLPPPPPPPMRR 50 >At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965; related to hydroxyproline-rich glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765 Length = 219 Score = 27.1 bits (57), Expect = 5.2 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = -3 Query: 340 SAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227 S P PP P ++ T AG PPPP P Sbjct: 119 SPPPPPPPPPPPPTITPPVTTTTAGHHHHRRSPPPPPP 156 >At5g38560.1 68418.m04662 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 681 Score = 26.6 bits (56), Expect = 6.8 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -3 Query: 343 SSAPAVAPPTGPDCVLSESDTLAAAGRSR-EFCIPPPPTPRT 221 S P+ +PP P + S T+A++ PPP TP T Sbjct: 63 SPPPSSSPPPSPPVITSPPPTVASSPPPPVVIASPPPSTPAT 104 >At5g34960.1 68418.m04125 hypothetical protein includes At5g34960, At2g14450, At1g35920 Length = 1033 Score = 26.6 bits (56), Expect = 6.8 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = +3 Query: 189 DPAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQSGPVGGATAGADEHKPSKPAK 368 +PA ++ S Q +L + G P++ V E++ S + AD + + P K Sbjct: 426 NPASIVSSDQVLLMLENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVADSKEVTVPTK 485 Query: 369 IKT 377 +KT Sbjct: 486 LKT 488 >At5g25170.1 68418.m02984 expressed protein Length = 218 Score = 26.6 bits (56), Expect = 6.8 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -3 Query: 319 PTGPDCVLSESDTLAAAGRSREFCIPPPPT 230 P GP S S + G R C+PP PT Sbjct: 186 PPGPSLSSSGSLNRSRRGERRRQCLPPSPT 215 >At5g24580.2 68418.m02903 copper-binding family protein similar to copper homeostasis factor gi:3168840 from Arabidopsis thaliana; contains Pfam profile PF00403: Heavy-metal-associated domain Length = 318 Score = 26.6 bits (56), Expect = 6.8 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 49 VYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESIT--EPAEEEPLPMI 192 V EN++ + QAV + I KK K+ A+ ++ AE EPLP I Sbjct: 85 VVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMAKVLSPLPAAEGEPLPPI 134 >At5g24580.1 68418.m02902 copper-binding family protein similar to copper homeostasis factor gi:3168840 from Arabidopsis thaliana; contains Pfam profile PF00403: Heavy-metal-associated domain Length = 319 Score = 26.6 bits (56), Expect = 6.8 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 49 VYQGYGENKLLARSAAVEQAVRDIIIKKIKKCAESIT--EPAEEEPLPMI 192 V EN++ + QAV + I KK K+ A+ ++ AE EPLP I Sbjct: 86 VVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMAKVLSPLPAAEGEPLPPI 135 >At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam PF03479: Domain of unknown function (DUF296); contains Pfam PF02178: AT hook motif; Length = 439 Score = 26.6 bits (56), Expect = 6.8 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Frame = +3 Query: 228 GVGGGGIQNSLLRPAAASVSDSEST-----QSGPVGGATAGADEHKPSKPAK 368 G GGGG N L A S S S G GG +AGA+ + PAK Sbjct: 145 GGGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANSSDPPAK 196 >At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|P79263 Inter-alpha-trypsin inhibitor heavy chain H4 precursor {Sus scrofa}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain Length = 676 Score = 26.6 bits (56), Expect = 6.8 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 385 KGRVLILAGLLGLCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227 K + + LA L LC+ P P L+ ++TL+ A P PTP Sbjct: 4 KWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLSPLNWPMTPTP 56 >At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|P79263 Inter-alpha-trypsin inhibitor heavy chain H4 precursor {Sus scrofa}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain Length = 675 Score = 26.6 bits (56), Expect = 6.8 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 385 KGRVLILAGLLGLCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTP 227 K + + LA L LC+ P P L+ ++TL+ A P PTP Sbjct: 4 KWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLSPLNWPMTPTP 56 >At1g59940.1 68414.m06752 two-component responsive regulator / response regulator 3 (ARR3) identical to response regulator 3 GI:3953595 from [Arabidopsis thaliana] Length = 231 Score = 26.6 bits (56), Expect = 6.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -3 Query: 298 LSESDTLAAAGRSREFCIPPPPTPRTA 218 L+ +AA G R+ PPPP P +A Sbjct: 160 LTRDVKVAAEGNKRKLTTPPPPPPLSA 186 >At1g24490.1 68414.m03084 60 kDa inner membrane family protein similar to chloroplast membrane protein (ALBINO3) (GI:3927828) [Arabidopsis thaliana] Length = 1013 Score = 26.6 bits (56), Expect = 6.8 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +3 Query: 192 PAGVLRSTQAVLGVGGGGIQNSLLRPAAASVSDSESTQS 308 P G+ T LG GG G+ ++P S+ +TQ+ Sbjct: 459 PLGISLPTLLSLGAGGWGVWKYFIKPRRHPESECSATQT 497 >At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 similar to beta-1,3-glucanase GI:6714534 from [Salix gilgiana] Length = 380 Score = 26.2 bits (55), Expect = 9.0 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -3 Query: 343 SSAPAVAPPTGPDCVL-SESDTLAAAGRSREFCIPPPPTPRTACVERRTPAGSWAAA 176 SS + +PPT P S+S + G S C+P P P V+++ G W A Sbjct: 240 SSIGSPSPPTIPYFPEPSQSPMESNQGISLPPCLPYHPAPSPQPVKKKNVEGLWCVA 296 >At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative bHLH127 transcription factor Length = 880 Score = 26.2 bits (55), Expect = 9.0 Identities = 19/68 (27%), Positives = 26/68 (38%) Frame = -3 Query: 349 LCSSAPAVAPPTGPDCVLSESDTLAAAGRSREFCIPPPPTPRTACVERRTPAGSWAAAPL 170 LC P + P +L S + GR +PPP P + SW PL Sbjct: 695 LCKIGQTQIPSSDPLPILRGS---GSGGREENTPLPPP-LPHQNLFIQEDEMSSWPHHPL 750 Query: 169 RRAR*CSQ 146 R+ CS+ Sbjct: 751 RQDYLCSE 758 >At3g50130.1 68416.m05480 expressed protein ; expression supported by MPSS Length = 564 Score = 26.2 bits (55), Expect = 9.0 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -3 Query: 244 PPPPTPRTACVERRTPAGSWAAAPLRR 164 PPPP P + R P S+ + P RR Sbjct: 12 PPPPPPSFRSIPRPPPPPSFRSIPPRR 38 >At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi domain-containing protein contains Pfam profiles PF02170: PAZ domain, PF02171: Piwi domain Length = 1194 Score = 26.2 bits (55), Expect = 9.0 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +3 Query: 237 GGGIQNSLLRPAAASVSDSES--TQSGPVGGATAGADEHKPSKPAKIKTLPFNAST 398 G G Q +P A S S S+ +QS GG GA KP + LP ++S+ Sbjct: 252 GRGTQLQQPQPQAVSQSSSQGQVSQSFATGGVGLGAWARKPQLFSDSTVLPSSSSS 307 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.316 0.133 0.413 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,968,520 Number of Sequences: 28952 Number of extensions: 188326 Number of successful extensions: 963 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 954 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 645327280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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