Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0478
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   6.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 LTSCLSMETSSILSSHLFGPRIAARCLPLQFLSPTNHSE 265
           L   L+M+    +++H   PR   RC+ L F S  + S+
Sbjct: 227 LREVLAMQVFKRITTHCSSPRFVNRCIILYFSSSEDKSD 265


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 241 ELQRQAASCYARSE*MRRKD*GSFHREAACQREEPSHVD 125
           E Q Q    Y RSE  RR+   +F R AA  ++ PS  D
Sbjct: 495 EEQDQIEERYHRSEAHRRRTKRAFRRLAASLKKRPSDKD 533


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 546  HSPLNQRSRRSHRFLKQYRLRH 611
            + PLN   RR H FL  YR  H
Sbjct: 2867 YPPLNITVRRDHVFLDSYRALH 2888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,607
Number of Sequences: 5004
Number of extensions: 51806
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)