Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0478
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    29   2.7  
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    29   4.7  
02_05_0908 + 32668706-32669140,32669772-32669957,32670316-326704...    28   6.2  

>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 240 NCKGRQRAAMRGPNKCEERIEEVSIERQLVSVKS 139
           NC    R  ++ P   + RIE+V++ER LV+  S
Sbjct: 151 NCGNMLRECIKYPTLTKVRIEDVAVERSLVAAAS 184


>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 231 LCNSCLQRIIQKIEY----DPLYQQELIINPKKDPAIVSNPVCEGKRAQVQS 374
           LC++C  R+  ++EY     PL  Q L+ +P     I S    + KR +++S
Sbjct: 453 LCDACFHRMGNEVEYTRIDKPLLPQRLLRDPTLCRKIHSRAAMKSKREKLES 504


>02_05_0908 +
           32668706-32669140,32669772-32669957,32670316-32670414,
           32671010-32671147,32672276-32672533,32675009-32675272,
           32675426-32675571,32675762-32675839,32676746-32676875,
           32677040-32677286,32677374-32677423,32677767-32677869,
           32678332-32678354
          Length = 718

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 414 WSFEQDCPKG--LMFSGD-GYCDYAENVDCNIRTPVNLKYRNFHNRNHSPLNQRSRRSHR 584
           WS+  + PK   LM SG  G CD  + V+C    P     R+FH R  S L+    + H 
Sbjct: 96  WSYSGNVPKNEHLMMSGPLGQCDDPDCVNC---PPACKNKRHFH-RGSSTLDS---KFHN 148

Query: 585 FLKQY 599
           FL ++
Sbjct: 149 FLCEH 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,028
Number of Sequences: 37544
Number of extensions: 323609
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)