Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0478
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 33 0.17
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_12340| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_26972| Best HMM Match : Bro-N (HMM E-Value=3.4) 30 2.1
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 30 2.1
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 3.6
SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05) 29 3.6
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 29 4.8
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 4.8
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 28 6.3
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 28 6.3
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 28 8.4
SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30) 28 8.4
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 303 INPKKDPAIVSNPVCEGKR-AQVQSPLTCNSFLNCWDGWSFEQDCPKGLMFS-GDGYCDY 476
+ P +P C GK+ + CN F+ C +G+ + DCP L + G C++
Sbjct: 504 VPPTTKAPFTKSPFCVGKQNGKYADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEW 563
Query: 477 AENVDCNIRTPVN 515
A+ VDC R ++
Sbjct: 564 ADTVDCGQRPTIS 576
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 321 PAIVSNPVCEGKR-AQVQSPLTCNSFLNCWDGWSFEQDCPKGLMFSGDGY-CDYAENVDC 494
P +P CE K+ P CN F+ C +G+++++DCP L F C++ V+C
Sbjct: 589 PTPPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKVNC 648
Query: 495 NIRTPVNLKY 524
R P + Y
Sbjct: 649 KSR-PTTVPY 657
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 369 QSPLTCNSFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAENVDCNIRTP 509
Q P C F++C + ++ CP+ L F+ +CD ENV C P
Sbjct: 452 QDPDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENVQCGPTRP 499
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 312 KKDPAIVSNPVCEGK-RAQVQSPLTCNSFLNCWDGWSFEQDCPKGLMFSG-DGYCDYAEN 485
K P ++ C+ + + P C ++ C G + ++C +GL F+G CD N
Sbjct: 660 KPTPPSGNSEFCKKNGNGRYRDPHNCLGYIVCRGGNIYFRNCRRGLRFNGVTKRCDLPRN 719
Query: 486 VDC 494
V C
Sbjct: 720 VKC 722
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 345 CEGKR-AQVQSPLTCNSFLNCWDGWSFEQDCPKGLMFS 455
CEG++ + CN F+ C + ++ DCP L F+
Sbjct: 731 CEGRKDGDYVDAVNCNGFIKCSNQLTYYFDCPSNLRFN 768
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +3
Query: 516 LKYRNFHNR--NHSPLNQRSRRSHRFLKQYR-LRH--LNLPVFKHYHQRYCPQRHYPLQ- 677
L++ FH R H P R R H F YR LRH + V +H+H Y RH+P
Sbjct: 1033 LRHHPFHYRVLRHHPFYYRVLRHHPF--HYRVLRHHPFHYRVLRHHHFHYRVLRHHPFHY 1090
Query: 678 NLLNH 692
+L H
Sbjct: 1091 RVLRH 1095
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 516 LKYRNFHNR--NHSPLNQRSRRSHRF-LKQYRLRHLNLPVFKHYHQRYCPQRHYPLQ-NL 683
L++ F+ R H P + R R H F + R H + V +H+ Y RH+P +
Sbjct: 1043 LRHHPFYYRVLRHHPFHYRVLRHHPFHYRVLRHHHFHYRVLRHHPFHYRVLRHHPFHYRV 1102
Query: 684 LNH 692
L H
Sbjct: 1103 LRH 1105
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 330 VSNPVCEGK-RAQVQSPLTCNSFLNCWDGW--SFEQDCPKGLMFS-GDGYCDYAENVDCN 497
V C+ K P C+ F C D + +F C GL +S CD+ NVDC+
Sbjct: 778 VDTTFCKDKPNGYYADPRDCSRFYQC-DAFHRAFLHRCSPGLKWSITKTTCDWPRNVDCD 836
Query: 498 IRTP 509
+TP
Sbjct: 837 RKTP 840
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 384 CNSFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAENVDC 494
C F++C + + + CP GL+++ CD+ NVDC
Sbjct: 91 CRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNVDC 128
>SB_12340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 513 NLKYRNFHNRNHSPLNQRSRRSHRFLKQ-YRLRHLNLPVFKHYHQRYCPQRHYPLQN--L 683
N +RN RNH PL R+H F +R L F+++ R P R++P +N L
Sbjct: 176 NHSFRNLPFRNH-PLRNHPLRNHPFRNHPFRNHPLRNHPFRNHPFRNHPFRNHPFRNHPL 234
Query: 684 LNH 692
NH
Sbjct: 235 RNH 237
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 513 NLKYRNFHNRNHSPLNQRSRRSHRFLKQ-YRLRHLNLPVFKHYHQRYCPQRHYPLQNL 683
N +RN RNH P R+H F +R L F+++ R P R++P +NL
Sbjct: 201 NHPFRNHPLRNH-PFRNHPFRNHPFRNHPFRNHPLRNHPFRNHPFRNHPFRNHPFRNL 257
>SB_26972| Best HMM Match : Bro-N (HMM E-Value=3.4)
Length = 323
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 85 DEDGNLVKTYTNPYLRDLALHADKLPLYGNFLNPFFAFIRTSHSSSLPAFAIPVSNES 258
D GNL++ +T P D +H + NFLNPF+ IR S L F I ++++S
Sbjct: 254 DNSGNLMRVFT-PKCDDGDMHEE------NFLNPFYFKIRFSF---LDTFRIQIADDS 301
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 537 NRNHSPLNQRSRRSHRFLKQYRLRHLNLPVFKHYHQRYCPQRHYPLQNLL 686
+R+ N+ R H ++ H N P HY + Q+ LQNLL
Sbjct: 188 HRHRQHYNRHRRHHHHHRHRHHHHHPNHPYSHHYPNHHRQQQQPRLQNLL 237
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 82 YDEDGNLVKTYTNPYLRDLALHADKLPLYGNFLNPFFAFI--RTSHSSSLPAFAIPVSNE 255
Y+++G + + T P D+ A+KL + N I RT + PA+AIP +
Sbjct: 2476 YEDNGGIPTSLTLPRPEDVQRDANKLTI-SNIKQGMSVLIADRTPETDRTPAYAIPAMKK 2534
Query: 256 SF 261
+F
Sbjct: 2535 TF 2536
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 345 CEGKRAQVQSPLTCNSFLNCWDGWSFEQDC 434
C K + S C+ +C DGW QDC
Sbjct: 2294 CGSKNLCIPSSWLCDGSDDCGDGWDERQDC 2323
>SB_27164| Best HMM Match : CBM_14 (HMM E-Value=1.1e-05)
Length = 85
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 345 CEGKRA-QVQSPLTCNSFLNCWDGW--SFEQDC---PKGLMFSGDGYCDYAENVDCNIR 503
C+ K A P C F C DG+ +F + C PK + CD+A+NVDC ++
Sbjct: 29 CKEKDAGHYTDPADCAKFYQC-DGFHRTFHRMCSDVPKWSVMKST--CDHAKNVDCRLK 84
>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 498 IRTPVNLKYRNFHNRNHSPLNQRSRRSHRFLKQYRLRH 611
+ TP N+ R+ RN +PL+ + +H + +Y L H
Sbjct: 606 LATPENINCRDTQGRNSTPLHLAAGYNHLEVAEYLLEH 643
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 76 LFYDEDGNLVKTYTNPYLRDLALHADKLPLYGNFLNPFFAFIRTSHSSSLPAFAIPVSN 252
LF+ ED + K Y+R + L AD LP+ + F+F +++SS++ I SN
Sbjct: 551 LFHAEDTKIEKLTIFSYVRFVNL-ADNLPVSSSQSPSLFSFYGSNNSSAVSGSKIRFSN 608
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 336 NPVCEGKRAQVQSPLTCNSFLNCWDGWSFEQDCPK-GLMFSGDGYCD-YAEN 485
N V EG A + S C+ NC DG S E++C + FS +C Y +N
Sbjct: 3853 NCVAEGPNACILSTQVCDFSKNCKDG-SDEKNCVQPSCDFSSGSFCGWYPDN 3903
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -2
Query: 221 ELLCEVRINAKKGLRKFP*RGSLSA*RAKSRRYGLVYVFTKLPSSS*NKSLFCLPSVCDE 42
E LC+V I A G R+FP ++ A A SR + +Y T L S +++ L +CD
Sbjct: 3580 EFLCDVIILADNGCRRFPAHRAVLA--ASSRYFHKLYNGTTLARYS-RETI--LSGICDR 3634
Query: 41 QPPKIIN 21
+ +++
Sbjct: 3635 ELETVVH 3641
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 519 KYRNFHNRNHSPLNQRSRRSHRFLKQYRLRHLNLPVFKHYHQRYCPQRHYPLQNLLNHK 695
K +N H+R+H + R H+ + RH +H+H RH QN +H+
Sbjct: 574 KQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHH------RHRKQQNQHHHR 626
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +3
Query: 402 CWDGWSFEQDCPKGLMFSGDGYCDYAENVDCNIRTPVNLKYRNFHNRNH-SPLNQRSRRS 578
C G +QDCP M DG N N P N + + N NH S N S +
Sbjct: 614 CSMGCDVDQDCPPNHMCRCDGMQTTNNNHPTNANHPSNANHPS--NANHPSNANHPSNAN 671
Query: 579 H 581
H
Sbjct: 672 H 672
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 VSNPVCEGKR-AQVQSPLTCNSFLNCWDGWSFEQDCPKGL 446
VSN C+ K P C+ ++ C +G + E CP GL
Sbjct: 332 VSN-FCQDKADGNYAHPSKCDMYITCSNGIAHEMPCPAGL 370
>SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)
Length = 1142
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 273 YDPLYQQELIINPKKDPAIVSNPVCEGKRAQVQSPLTCNSFLNCWDGWSFEQDCPKGLMF 452
Y Y+ E+ I K +S P R V P +F+ DGW F+ DC L +
Sbjct: 94 YAETYENEMNILGKWTAKGLSRPNFSNTRGDVSLPK--KAFI-APDGWRFDGDC---LSY 147
Query: 453 SGD-GYCDYAENV-DCNIRTP 509
D G+ + E+V C R P
Sbjct: 148 DRDSGHKTFLEDVFQCESRLP 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,163
Number of Sequences: 59808
Number of extensions: 379234
Number of successful extensions: 4684
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4680
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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