Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0478
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 44 1e-04
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 33 0.15
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 33 0.20
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 33 0.20
AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O s... 30 1.4
AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan sulph... 30 1.4
Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical p... 28 7.4
Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical p... 28 7.4
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 28 7.4
U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center... 28 7.4
AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical ... 27 9.8
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 345 CEGKRAQVQSPLTCN-SFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAENVDCNIRTP 509
C GK C SF C DG +F DCP L+F+ G CD+AEN + N P
Sbjct: 433 CTGKPNGKYIKEACTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAENCEKNYMEP 489
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 384 CNSFL-NCWDGWSFEQDCPKGLMFSG-DGYCDYAENVD 491
C +L C++ +F+ CP GL +S CD ENV+
Sbjct: 701 CEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVE 738
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 384 CNS-FLNCWDGWSFEQDCPKGLMF 452
C+S +L C + +EQ CP+GL F
Sbjct: 54 CSSKYLQCVNNVEYEQSCPEGLYF 77
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 387 NSFLNCWDGWSFEQDCPKGLMFS-GDGYCDYAENVD-CNIRT 506
+SF C +G CP GLMFS + CDY NVD C++ +
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLES 294
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 339 PVCEGKRAQVQSPLTCNS-FLNCWDGWSFEQDCPKGLMFSGD-GYCDYAENV-DC-NIRT 506
P CEGK + C++ FL C G + DCP L+F+ CD+ +V +C + T
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPT 304
Query: 507 P 509
P
Sbjct: 305 P 305
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 339 PVCEGKRAQVQSPLTCNS-FLNCWDGWSFEQDCPKGLMFSGD-GYCDYAENV-DC-NIRT 506
P CEGK + C++ FL C G + DCP L+F+ CD+ +V +C + T
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPT 304
Query: 507 P 509
P
Sbjct: 305 P 305
>AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O
sulfotransferase HST-6 protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 327 IVSNPVCEGKRAQVQSPLTCNSFLNCWDGWSFEQ--DCPKGLMFS 455
I S VC GK A V TC W+G S E+ CP L F+
Sbjct: 196 ISSKHVCNGKPASVNDLPTCFDPRIGWEGVSLEEFISCPYNLAFN 240
>AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan
sulphotransferase protein 6 protein.
Length = 362
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 327 IVSNPVCEGKRAQVQSPLTCNSFLNCWDGWSFEQ--DCPKGLMFS 455
I S VC GK A V TC W+G S E+ CP L F+
Sbjct: 196 ISSKHVCNGKPASVNDLPTCFDPRIGWEGVSLEEFISCPYNLAFN 240
>Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 178 LNPFFAFIRTSHSSSLPAFAIPVSNESFRRLSMTH 282
+N FAF R+ + P IP SN S + TH
Sbjct: 148 MNVHFAFRRSPFQTECPLIEIPQSNRSCQEFFATH 182
>Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 178 LNPFFAFIRTSHSSSLPAFAIPVSNESFRRLSMTH 282
+N FAF R+ + P IP SN S + TH
Sbjct: 148 MNVHFAFRRSPFQTECPLIEIPQSNRSCQEFFATH 182
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 306 NPKKDPAIVSNPVCEGKRAQVQSPLTCNSFLNCWDGWSFEQDCPKGLMFS 455
N ++D + C K+ + S N F++C G ++ CP L+F+
Sbjct: 86 NTEEDDTPYAEFDCTSKQDGIYSIGCSNQFISCVAGGAYMAKCPDSLVFN 135
>U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center
kinase family protein2 protein.
Length = 829
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 185 LSSHLFGPRIAARCLPLQFLSPTNHSE-D*V*PTISARAYN 304
L +HL G R+ ARCL SP SE D PT + R+ N
Sbjct: 332 LPAHLNGLRLDARCLEQLSSSPNTSSESDRRTPTATPRSLN 372
>AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.8 protein.
Length = 383
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 457 PENINPFGQSCSKDQPSQQLRKLLHVKGDWTWALFPSQTGLLT 329
P N+ F Q CS L KL + D + AL PS LL+
Sbjct: 106 PTNLRDFAQKCSDPHELSLLAKLELIVFDESTALNPSSAVLLS 148
>AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.2 protein.
Length = 383
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 457 PENINPFGQSCSKDQPSQQLRKLLHVKGDWTWALFPSQTGLLT 329
P N+ F Q CS L KL + D + AL PS LL+
Sbjct: 106 PTNLRDFAQKCSDPHELSLLAKLELIVFDESTALNPSSAVLLS 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,861,651
Number of Sequences: 27780
Number of extensions: 289881
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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