Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0478
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.4  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 513 NLKYRNFHNRNHSPLNQRSRRSHRFLKQYRLRHLNLPV 626
           N KY N++N N++  N  + +  ++     +  + +PV
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPV 125


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 513 NLKYRNFHNRNHSPLNQRSRRSHRFLKQYRLRHLNLPV 626
           N KY N++N N++  N  + +  ++     +  + +PV
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPV 125


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 513 NLKYRNFHNRNHSPLNQRSRRSHRFLKQYRLRHLNLPV 626
           N KY N++N N++  N  + +  ++     +  + +PV
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPV 125


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 513 NLKYRNFHNRNHSPLNQRSRRSHRFLKQYRLRHLNLPV 626
           N KY N++N N++  N  + +  ++     +  + +PV
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPV 125


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 83  TMKMAIW*RRILIHI 127
           T KMA W +R+ IHI
Sbjct: 338 THKMAPWVKRVFIHI 352


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 83  TMKMAIW*RRILIHI 127
           T KMA W +R+ IHI
Sbjct: 338 THKMAPWVKRVFIHI 352


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 486 VDCNIRTPVNLKYRNFHNRNHSPLNQRSRRSHRFLKQY 599
           ++ +I +P    Y + HN  H  ++      HR+L+ +
Sbjct: 349 MEASILSPNQNVYGDLHNFGHVAISYIHDPDHRYLESF 386


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 250 WRQELQRQAASCYARS 203
           +RQE+  Q  SC ARS
Sbjct: 70  YRQEVHAQVYSCLARS 85


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 143 RAKSRRYGLVYVFTKLPSSS*NKSLFCLPSVCDEQPPKIINKTK 12
           R++SRRY   +  + +   S + S    PS+   QP +  NK K
Sbjct: 18  RSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEK 61


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 394 KLLHVKGDWTWALFPSQTGLLT 329
           +LL    DW+WA +   +G+++
Sbjct: 106 RLLQPYPDWSWANYKDCSGIVS 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,562
Number of Sequences: 438
Number of extensions: 3609
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)