Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0478
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70370.1 68414.m08095 BURP domain-containing protein / polyga...    30   1.7  
At3g28670.1 68416.m03578 expressed protein                             29   3.0  
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7...    29   3.0  
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam...    27   9.0  

>At1g70370.1 68414.m08095 BURP domain-containing protein /
           polygalacturonase, putative similar to polygalacturonase
           isoenzyme 1 beta subunit [Lycopersicon esculentum]
           GI:170480; contains Pfam profile PF03181: BURP domain
          Length = 626

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 82  YDEDGNLVKTYTNPYLRDLALHADKLPLYGNFLN 183
           Y +DGN+V      Y R+ A H DK  +YG   N
Sbjct: 142 YSKDGNVVTDSFRRYSRNAAGHDDKFTVYGENSN 175


>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 70  RLLFYDEDGNLVKTYTNPYLRDLALHADKL 159
           RL  Y E G+  +T+T+   ++LA+HA +L
Sbjct: 203 RLPIYGEGGSSAQTFTDTIRKELAIHAKEL 232


>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
           contains Pfam profiles:  PF03789 ELK domain, PF03790
           KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
           protein HD1 SP:P46606 from [Brassica napus]; identical
           to cDNA  homeodomain transcription factor KNAT7 (KNAT7)
           GI:11878229
          Length = 291

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 510 VNLKYRNFHNRNHSPLNQRSRRSH 581
           +N + RN+HN +HS  + +S+R H
Sbjct: 268 INQRKRNWHNNSHSLTSLKSKRKH 291


>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
           protein contains G-protein beta WD-40 repeats
          Length = 539

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 418 DQPSQQLRKLLHVKGDWTWALFPSQTGLLTIAGS 317
           D+ S +  K L    DW W L P +T L + +GS
Sbjct: 283 DRSSMKCVKTLR-HSDWVWGLAPHETTLASTSGS 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,640
Number of Sequences: 28952
Number of extensions: 270306
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)