Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0474
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)               169   1e-42
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               43   2e-04
SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     34   0.12 
SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)               33   0.27 
SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)               31   0.62 
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     29   4.4  
SB_14022| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   5.8  
SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)          28   7.7  

>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score =  169 bits (412), Expect = 1e-42
 Identities = 79/127 (62%), Positives = 97/127 (76%)
 Frame = +2

Query: 266 SDDEEQEDSADYCKGGYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKV 445
           SDDEEQED  DYCKGGYHPV++GDLF NRY V RKLGWGHFSTVWL WD+ + ++VALK+
Sbjct: 30  SDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGWGHFSTVWLAWDVSENKYVALKI 89

Query: 446 VKSAPHFTETALDEIKILRAVETAIPPILRETKPVQLLNDFKITGVNGTHVCMVFEVLGH 625
           VKSA H+TETA+DE+K+LR V TA P        VQL +DFKI G+NG+ + + FE  G 
Sbjct: 90  VKSASHYTETAIDEMKLLRTVHTADPKHHGHKHVVQLTDDFKIVGINGSRI-LSFE--GP 146

Query: 626 HLLKLIL 646
           +LL + L
Sbjct: 147 YLLYIFL 153


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
 Frame = +2

Query: 311 GYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLV-DKRFVALKVVKSAPHFTETALDE 487
           GY+ V+IG+L   RY+V    G G FS V    D     + V +K++++     +T L E
Sbjct: 649 GYYRVRIGELLDKRYNVYGFSGSGVFSNVVRARDQARGSQEVVVKIIRNNEMMHKTGLKE 708

Query: 488 IKILRAVETAIPPILRETKPVQLLNDFKITGVNGTHVCMVFEVLGHHLLKLILR 649
           ++ L+ +  A P    +   ++L   F     +  H+C+VFE L H  L+ +LR
Sbjct: 709 LEFLKKLNDADPD--DKYHCLRLYRHF----FHKNHLCLVFESL-HMNLREVLR 755


>SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/102 (26%), Positives = 42/102 (41%)
 Frame = +2

Query: 347 NRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTETALDEIKILRAVETAIPP 526
           +RY V   LG G F  V  CW       VA+K++K  P +      EI IL  +      
Sbjct: 96  SRYEVLEFLGRGTFGQVVKCWKKGTNELVAIKILKDHPSYARQGQIEISILAKLSAENSE 155

Query: 527 ILRETKPVQLLNDFKITGVNGTHVCMVFEVLGHHLLKLILRS 652
                + ++          +  H C+VFE+L  +L   + +S
Sbjct: 156 AYNFVRAIECFQ-------HKNHTCLVFEMLQQNLYDYLKQS 190


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 344 LNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALK---VVKSAPHFTETALDEIKIL 499
           +  Y   R +G G + TV+LC  LVD   V +K   V +      ++AL+E+K+L
Sbjct: 1   MQNYEKVRIVGRGAYGTVYLCRRLVDNFLVIIKQIPVEEMTKEERQSALNEVKVL 55


>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 332 GDLFLNRYHVTRKLGWGHFSTVWLCWDL 415
           G ++ NRY V R+LG G F TV+L  DL
Sbjct: 19  GRVYANRYRVVRRLGSGSFGTVFLVEDL 46


>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
          Length = 1123

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 344 LNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVKSAPHFTE---TALDEIKILRAVE 511
           +NRY     +G G F + WL      KR  ALK + +    +E    AL+E+KIL  ++
Sbjct: 1   MNRYQKIDIIGKGTFGSAWLVESRQSKRLYALKELNATAMPSEDRHLALNEVKILSTLK 59


>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
          Length = 436

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 347 NRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKV 445
           N+Y +   LG G FS V+  +DLV+ R+VA K+
Sbjct: 166 NQYLLLSLLGKGGFSEVYKGYDLVNHRYVACKI 198


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 353 YHVTRKLGWGHFSTVWLCWDLVDKRFVALKVV-KSAPHFTETAL-DEIKILR 502
           Y+  +KLG G+F+ V  C D + ++  A+K++ K      E  + DEI I+R
Sbjct: 447 YNFGQKLGDGNFAIVRQCKDKITQKEFAIKIIDKRKIRGKEKMIDDEIAIMR 498


>SB_14022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
 Frame = +2

Query: 344 LNRYHVTRKLG-WGHFSTVWLCWDLVDKRFVALKVVKSA----PHFTETALDEIKIL--- 499
           + R+++T K   W HF+++        +R+V L + + A    P +T    DE  +    
Sbjct: 399 VERFNMTLKTKMWRHFTSLHFTHRNT-RRYVELHIAQDATVFRPKYTLPRADEYHMFLSS 457

Query: 500 RAVETAIPPILRETKPVQLLNDFKITGVNGTHVCMVFEVLGHHLLKLILRS 652
            A++ A+P          +L+D ++   +G + C V  V+ H   + ILR+
Sbjct: 458 NAIKGALPE--NTASNFGILHDHRLDLSDGPYQCAVTNVVVHTRARDILRT 506


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 266 WCIAIFVFLNCFVGRTMRWF*TILVLVTQTVSLANSPVFFLAIFLFTNFVSFF-LRLYGE 90
           W + +FVFLN        +       +TQ +  AN    FLA+F     V  + L  +G 
Sbjct: 767 WTVIVFVFLNSLTLALEHY--NQPEFLTQFLDKANK--LFLALFTLEMVVKMYCLGFHGY 822

Query: 89  YSSIYIRF 66
           ++S++ RF
Sbjct: 823 FASLFNRF 830


>SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)
          Length = 1292

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 272  DEEQEDSADYCKGGYHPVKIGDLFLNRYHVTRKLGWGHFSTVWLCWDLVDKRFVALKVVK 451
            DE+   S        H  ++ ++ +N +H +  +   H +  WL  DLV+   VA    +
Sbjct: 1063 DEQMAASTHAPYADAHQARLNNVHVNGHHYSSWIAQTHDTNQWLKIDLVNVTKVACVATQ 1122

Query: 452  SAPHFTE 472
             +  F +
Sbjct: 1123 GSQEFQD 1129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,083,087
Number of Sequences: 59808
Number of extensions: 373769
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)