Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0471
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K6U2 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_P93820 Cluster: F19P19.16; n=8; Arabidopsis thaliana|Re...    33   6.6  
UniRef50_Q894R5 Cluster: Conserved protein; n=5; Clostridium|Rep...    33   8.8  

>UniRef50_A5K6U2 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 3826

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 355  QPVSQ*QLLFLNKNHERLSKVLLVITH-KVTKQKNVVSRKCIQN*SYDDTM 206
            +P  +  L+F  KNH  L K++   ++ K+++ KN +  + +QN SYD  M
Sbjct: 3093 KPFQRKYLIFTQKNHVVLLKIVFAKSNRKISRSKNGLMERILQNCSYDKKM 3143


>UniRef50_P93820 Cluster: F19P19.16; n=8; Arabidopsis thaliana|Rep:
           F19P19.16 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 979

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 497 VTVVNLEVYKEWPECDHSITVMCDEGMFVXDLILCCDLTGSARSSRILGQIMTQ 658
           +TV  L++Y     C H    + D G  + D+++ C    S++++RI G  + Q
Sbjct: 229 LTVATLKLYSSLALCGHGANELLDNGKPMLDMMISCMEESSSQNARIEGLKLAQ 282


>UniRef50_Q894R5 Cluster: Conserved protein; n=5; Clostridium|Rep:
           Conserved protein - Clostridium tetani
          Length = 528

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 425 TETVNRIIFFSICVILMK*NYLNYVTVVNLEVYKEWPECDHSITVMCDEGMFVXDLI 595
           TE  +++  F   +++   NY  + T  N E+YK    C++ IT M D   F+ DL+
Sbjct: 77  TEGYSKVEKFLSSIMMQIVNYFRFST--NKEMYKFIKNCENQITNMNDFNSFITDLV 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,774,141
Number of Sequences: 1657284
Number of extensions: 11498015
Number of successful extensions: 23018
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23014
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)