Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0471
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23988| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-10)            29   4.7  
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  29   4.7  
SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)                 28   6.2  
SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               28   6.2  

>SB_23988| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-10)
          Length = 304

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 157 GERWREYGDGFLVLKFTSCHHSFSFEYTYEKPH 255
           GE+W+ Y DG  V+K    HH  S EY+    H
Sbjct: 195 GEQWQSYLDGNGVIKVR--HHMCSVEYSLRVDH 225


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 503 VVNLEVYKEWPECDHSITVMCDE-GMFVXDLIL--CCDLTGSARSSRILGQIMTQSE 664
           VV+    + WPE    + V+C   G +V D      C L   AR  R +GQ   Q E
Sbjct: 77  VVSFSKNQRWPEYGEPVCVVCGRYGAYVCDQTEQDICSLECKARHLRDIGQHHNQEE 133


>SB_29301| Best HMM Match : MFS_1 (HMM E-Value=2.9e-05)
          Length = 662

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 184 GFLVLKFTSCHHSFSFEYTYEKPHFFVSLLCVLLRVKLWIIFR 312
           GF+V  F SC +S +  Y    P F+V  L + L   + + FR
Sbjct: 357 GFVVTAFHSCQYSDNINYV---PVFYVFALAMFLNFVVTLFFR 396


>SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 163

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 539 CDHSITVMCDEGMFVXDLILCCDLT 613
           CD  +T+ CD  +   DL+LCCDLT
Sbjct: 60  CD--LTLCCDMSL-CCDLLLCCDLT 81



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 539 CDHSITVMCDEGMFVXDLILCCDLT 613
           CD  +T+ CD  +   DL+LCCDLT
Sbjct: 120 CD--LTLCCDMSL-CCDLLLCCDLT 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,884,932
Number of Sequences: 59808
Number of extensions: 377673
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)