Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0471
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    29   3.2  
M22363-1|AAA28158.1|  467|Caenorhabditis elegans protein ( C.ele...    27   9.6  
L10990-6|AAB59176.1|  467|Caenorhabditis elegans Uncoordinated p...    27   9.6  

>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 187 FLVLKFTSCHHSFSFEYTYEKPHFFVSLLCVLLRVKLWIIFR--DFC*EIIIV 339
           FL      C  +F + +T+    F +S+   LLR+K W      DF   +IIV
Sbjct: 184 FLTYGLLQCIDAFFYLFTFLPLRFLMSIFGALLRIKRWTSAETCDFLKVVIIV 236


>M22363-1|AAA28158.1|  467|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 467

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 571 RNVCLXSNTVLRPYGKCAFISYTGPDHDTIGTTNL 675
           +NV   +N ++RP+   ++ +Y    HDT   TN+
Sbjct: 157 KNVPQLTNPLMRPHDMFSYSNYFSGIHDTSAATNI 191


>L10990-6|AAB59176.1|  467|Caenorhabditis elegans Uncoordinated
           protein 86, isoform b protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 571 RNVCLXSNTVLRPYGKCAFISYTGPDHDTIGTTNL 675
           +NV   +N ++RP+   ++ +Y    HDT   TN+
Sbjct: 157 KNVPQLTNPLMRPHDMFSYSNYFSGIHDTSAATNI 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,408
Number of Sequences: 27780
Number of extensions: 302708
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)