Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0471
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04390.1 68414.m00429 expressed protein                             33   0.18 
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (...    29   3.9  
At4g24790.1 68417.m03550 expressed protein ; expression supporte...    28   5.1  

>At1g04390.1 68414.m00429 expressed protein
          Length = 849

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 497 VTVVNLEVYKEWPECDHSITVMCDEGMFVXDLILCCDLTGSARSSRILGQIMTQ 658
           +TV  L++Y     C H    + D G  + D+++ C    S++++RI G  + Q
Sbjct: 229 LTVATLKLYSSLALCGHGANELLDNGKPMLDMMISCMEESSSQNARIEGLKLAQ 282


>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
           (IRX5) nearly identical to cellulose synthase
           [Arabidopsis thaliana] GI:27462651; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1049

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = -3

Query: 380 YTYKPRVISAGQSMTXXXXXXXXXXXXXSFTRNNTQSNETKKCGFS*VYSKLKL**HDVN 201
           Y Y+P V    + MT                RN+   +  KK G   ++SKLK       
Sbjct: 582 YGYEPPVSEKRKKMTCDCWPSWICCCCGGGNRNHKSDSSKKKSGIKSLFSKLKK-KTKKK 640

Query: 200 FNTKNPSPYSRHRS 159
            + K  S YSR RS
Sbjct: 641 SDDKTMSSYSRKRS 654


>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 17  TEKNYKLIASQSEKRLINF-DLS**SATS*INSECSDKMRSVSLSKRMVSDGENTVMDFW 193
           T   YKLI   S+  L++  DL+  S TS       + MRS     +++S   N +MD  
Sbjct: 469 TSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDII 528

Query: 194 C*NLHRVIIASVLNTLTRN 250
             N      A+ L  LTR+
Sbjct: 529 AGNSQESSSATRLRFLTRH 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,665,766
Number of Sequences: 28952
Number of extensions: 262283
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)