Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0470
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.15 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   4.2  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    26   4.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   4.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   4.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.4  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.4  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   9.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   9.7  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   9.7  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   9.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   9.7  

>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  CVFYLKIQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFASTACIDYDGFL---NMK 218
           C+   K++    ++ V+L    KL  ++ FT  FV+ L A + +TAC    G+L     +
Sbjct: 113 CILNYKLEWT--YSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSR 170

Query: 219 LEHSLNCNDEKFV 257
              +   N++KF+
Sbjct: 171 FHDNRRWNEQKFM 183


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 63  KIQLVIKFTNVVL-ISLN--KLIIMQQFTLFFVVHLTALFASTACIDYDGFLNMKLEHSL 233
           K Q   KF NV+L I LN  K + +Q +  FFV  L ALF    C D      M  E+ +
Sbjct: 265 KEQQTQKFANVLLQIILNSRKNLSLQNYVGFFVSVLDALF---ECFDVPVVQYMYQENII 321

Query: 234 NCNDEKF 254
              +E F
Sbjct: 322 GICNEHF 328


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 104 IFE*INNNAAVYLILCCTFNCTFCIYGMYR 193
           +F  IN   +V+L L    +CT  IYG+ R
Sbjct: 1   MFANINIRKSVWLFLLAAVSCTLFIYGVTR 30


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 175 AKSAVKCTTKNKVNCCIIINLFKDINT 95
           ++SA+K     K++ C  INL KDI+T
Sbjct: 822 SRSALKPLISGKLSSCESINLTKDIST 848


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 193 SIHAVDAKSAVKCTTKNK 140
           ++H +D+ SA+ CT KN+
Sbjct: 150 ALHGIDSASALSCTEKNR 167


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 283 ALQSYTSSMTNFSSLQFKECSSFMFKKPS*SIHAVDAKSAV 161
           +L + ++S T FSSL   + S+  F   S S+   +AKS++
Sbjct: 497 SLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSL 537


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 275  LKSIRTGVPIIDQILFNEKHL 337
            L  +R  +PI+D+  F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 36  IIYGCVFYLKIQLVIKFTNVVLIS 107
           I Y C F+LK Q  +KF  +V  S
Sbjct: 81  IFYDCFFFLKEQQTLKFIIIVFQS 104


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 598 RYIEQAPVPDLRHIYKKW 651
           RY EQA + D++ ++K W
Sbjct: 268 RYNEQALIKDIQQVFKDW 285


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 514 AVNFQVANSTQPLKQ---ATNEYKLNSKFYLRYIEQAPVPDLRHIYKKWN 654
           AVN ++ NS+  +     A     LNS+ +  ++E+ P+P L  I+   N
Sbjct: 579 AVNRKILNSSDAITSIPLAFGAICLNSQGFDLFLEKNPIPQLFSIFTSLN 628


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 255 QIFHHCNLKSVLVSCSK---NHHNLYMP*MQKVQLNV 154
           QI HH NL SVL +  +   N H  Y+   Q + L++
Sbjct: 238 QIPHHSNLASVLATTYEALINMHTAYLEINQSINLSL 274


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 401 GENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGALLQSIS 526
           G +++ T +  S   +  +   L   I  W LP G L+ SIS
Sbjct: 570 GHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDSIS 611


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 21 PFKFEIIYGCVFYLKIQLVIKFTNV 95
          P+KFEI + C+  LK  L  K T V
Sbjct: 21 PYKFEITFECLEPLKSDLEWKLTYV 45


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 392 ITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 502
           +   EN+KG+E   S K    +++  S ++N ++ P+
Sbjct: 246 LANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPD 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,354
Number of Sequences: 5004
Number of extensions: 42771
Number of successful extensions: 168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)