Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0470
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    33   0.20 
02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93...    32   0.47 
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925...    29   2.5  
07_03_0708 - 20865786-20867153                                         29   2.5  

>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 266 SITLKSIRTGVPIIDQILFNEKHL-----EALKKLANEDEFYSIKTTITTGENSKGTEYL 430
           S  LKS   G   + ++ F    L     +A KKL +ED FYSI+      + ++    +
Sbjct: 99  SARLKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFYSIRLLSNVLDPARKDYVV 158

Query: 431 SSVKAQAFLENGLSDVI 481
           SS+KA+      L + I
Sbjct: 159 SSIKARCIPRESLDEHI 175


>02_01_0128 -
           930461-930828,931223-931369,931567-931704,931888-931975,
           932068-932157,932249-932315,933411-933535,934079-934213
          Length = 385

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 389 TITTGENSKGTEYLSSVKAQAFLENGLS-DVINAWILPNGALLQSISK 529
           T+  GE+S    Y++S+K  AF+  G S +V+N      GAL QS+ K
Sbjct: 121 TLCDGEDSVKWSYMNSLKEAAFIITGNSKNVMNMSQADQGALWQSVMK 168


>07_03_0945 -
           22791754-22791863,22792295-22792367,22792457-22792552,
           22793268-22793331,22793957-22794008,22794525-22794622,
           22795108-22795166,22795981-22796013
          Length = 194

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 54  FYLKIQLVI-KFTNVVLISLNKLIIMQQFTLFFVVHLTALFASTA 185
           F+LK Q  I +  N++   LNK +   +  + F+ H+ A  ASTA
Sbjct: 115 FFLKHQAKIDRILNILSKELNKFVSSHEDEIHFIEHMAARGASTA 159


>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 329 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENG 466
           KH EA+++  +   F S   T   G+ +      SSV  QA LENG
Sbjct: 42  KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,606
Number of Sequences: 37544
Number of extensions: 214658
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)