Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0470
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       30   1.5  
SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                28   7.8  

>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 326 EKHLEALKKLANEDEFYSIKTTITTGE 406
           ++HL A +KLA+ED+ Y    T+ T E
Sbjct: 659 QRHLRAAEKLADEDQSYRAAITVVTDE 685


>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 18  VPFKFEIIYGCVFYLKIQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFASTACIDY 197
           VPFK  +       + I + IKFTN+     + +II+   T   ++ +  +F     +D 
Sbjct: 229 VPFKRLVRRSYNIVITITITIKFTNI-----DTIIIVINITNIIIILINIIFIRGIIVDI 283

Query: 198 DGFLNMKLEHSLNCNDE 248
             +++ K  H  + NDE
Sbjct: 284 --YIHCKHYHIHHFNDE 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,727
Number of Sequences: 59808
Number of extensions: 282351
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)