Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0470
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF002198-5|AAF99934.2| 329|Caenorhabditis elegans Serpentine re... 29 2.2
Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF078785-6|AAC27094.1| 337|Caenorhabditis elegans Serpentine re... 28 5.1
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 27 9.0
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 27 9.0
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 27 9.0
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 27 9.0
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 27 9.0
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 27 9.0
>Z37092-6|CAE46667.1| 334|Caenorhabditis elegans Hypothetical
protein F44F4.5b protein.
Length = 334
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 3 IQLLIVPFKFEIIYGCVFYLKIQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFAST 182
I ++ F + Y +F LKI+ + + +L+ + L + +F V+ TAL S
Sbjct: 31 IMTIVAIITFILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSF 90
Query: 183 ACID 194
D
Sbjct: 91 TLSD 94
>Z37092-5|CAA85456.1| 336|Caenorhabditis elegans Hypothetical
protein F44F4.5a protein.
Length = 336
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 3 IQLLIVPFKFEIIYGCVFYLKIQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFAST 182
I ++ F + Y +F LKI+ + + +L+ + L + +F V+ TAL S
Sbjct: 31 IMTIVAIITFILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRSF 90
Query: 183 ACID 194
D
Sbjct: 91 TLSD 94
>AF002198-5|AAF99934.2| 329|Caenorhabditis elegans Serpentine
receptor, class x protein122 protein.
Length = 329
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 60 LKIQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFASTACIDYDGFLNMKLEHSLNC 239
L IQ +++ +++ SLN I F F +T F+ +GF+ + S+N
Sbjct: 233 LIIQAIVQSILIIVDSLNSTITYNMFPNLFFQFITLSFSMVFLRTVEGFVVFSINTSINA 292
Query: 240 NDEKFV 257
+K +
Sbjct: 293 AVKKMI 298
>Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical
protein F49C5.2 protein.
Length = 329
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 66 IQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFASTACIDYDGFLNMKLEHSLNCND 245
IQ +++ +++ SLN I F F +T F+ +GF+ + S+N
Sbjct: 235 IQAIVQSILIIVDSLNSTITYNMFPNLFFQFITLSFSMVFLRTVEGFVVFSINTSINAAV 294
Query: 246 EKFV 257
+K +
Sbjct: 295 KKMI 298
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 316 YLINNRNSRSYALQSYTSSMTNFSSLQF 233
+ + NRN RS AL YT++ FS L +
Sbjct: 3070 FRVENRNRRSKALNRYTTTSNMFSDLPY 3097
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 316 YLINNRNSRSYALQSYTSSMTNFSSLQF 233
+ + NRN RS AL YT++ FS L +
Sbjct: 3070 FRVENRNRRSKALNRYTTTSNMFSDLPY 3097
>AF078785-6|AAC27094.1| 337|Caenorhabditis elegans Serpentine
receptor, class x protein121 protein.
Length = 337
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +3
Query: 60 LKIQLVIKFTNVVLISLNKLIIMQQFTLFFVVHLTALFASTACIDYDGFLNMKLEHSLNC 239
L IQ +++ +++ SLN I F +T F+ +GF+ + +S+N
Sbjct: 233 LIIQAIVQSILIIIDSLNSSITYNMFPNLIFQFITLSFSMVFLRTVEGFVVFSINNSINA 292
Query: 240 NDEKFV 257
+K +
Sbjct: 293 AVKKMI 298
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 269 ITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTI 394
+T+KS+ T I+D F E H E +KK N ++F + T+
Sbjct: 62 MTVKSLDTA--IVDMEYFFETHYEYIKKKNNSEKFSFMVETL 101
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +2
Query: 326 EKHLEALKKLANED--EFYSIKTTITTGENSKGT--------EYLSSVKAQAFLENGLSD 475
+ H+ A+ + A+ D F ++ I +GE+ G YL+SV A NG +
Sbjct: 177 DPHIFAVAEEAHFDMGAFGKSQSIIVSGESGAGKTVSAKFVMRYLASVAASK-TRNGGTT 235
Query: 476 VINAWILPNGALLQSISKLLTLRN 547
I A +L + +++SI T+RN
Sbjct: 236 SIEARVLASNPIMESIGNAKTIRN 259
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +2
Query: 326 EKHLEALKKLANED--EFYSIKTTITTGENSKGT--------EYLSSVKAQAFLENGLSD 475
+ H+ A+ + A+ D F ++ I +GE+ G YL+SV A NG +
Sbjct: 177 DPHIFAVAEEAHFDMGAFGKSQSIIVSGESGAGKTVSAKFVMRYLASVAASK-TRNGGTT 235
Query: 476 VINAWILPNGALLQSISKLLTLRN 547
I A +L + +++SI T+RN
Sbjct: 236 SIEARVLASNPIMESIGNAKTIRN 259
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +2
Query: 326 EKHLEALKKLANED--EFYSIKTTITTGENSKGT--------EYLSSVKAQAFLENGLSD 475
+ H+ A+ + A+ D F ++ I +GE+ G YL+SV A NG +
Sbjct: 177 DPHIFAVAEEAHFDMGAFGKSQSIIVSGESGAGKTVSAKFVMRYLASVAASK-TRNGGTT 235
Query: 476 VINAWILPNGALLQSISKLLTLRN 547
I A +L + +++SI T+RN
Sbjct: 236 SIEARVLASNPIMESIGNAKTIRN 259
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 487 CIDNIRETIFQKCLSFN 437
CID+I ET+FQ C +FN
Sbjct: 106 CIDDI-ETVFQNCYTFN 121
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 487 CIDNIRETIFQKCLSFN 437
CID+I ET+FQ C +FN
Sbjct: 106 CIDDI-ETVFQNCYTFN 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,631,490
Number of Sequences: 27780
Number of extensions: 229936
Number of successful extensions: 713
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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