Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0470
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ...    30   1.2  
At1g04650.1 68414.m00462 hypothetical protein                          30   1.6  
At5g52180.1 68418.m06477 expressed protein                             29   2.1  
At2g30380.1 68415.m03697 expressed protein contains Pfam profile...    28   4.8  
At3g56360.1 68416.m06268 expressed protein unknown protein 110K5...    27   8.4  

>At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO
           Domain IPR002109, Glutaredoxin (thioltransferase)
          Length = 630

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 287 RTGVPIIDQILFNEKH---LEALKKLANEDEF 373
           RTG   + QI FNEKH   L AL  L N  EF
Sbjct: 202 RTGSSQVPQIFFNEKHFGGLMALNSLRNSGEF 233


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/57 (19%), Positives = 28/57 (49%)
 Frame = +3

Query: 351 NSQMKMNSIQLKQQLQQVKTAKELNIYHRLKLKHFWKMVSLMLSMHGYYLMELYCSQ 521
           ++ ++++  ++ +  +  K+     +YH L  K  W +V   ++  GY+     C+Q
Sbjct: 731 HNHLRLSKYEMSETKKCPKSIAVWELYHMLLRKRHWALVHHAVTAFGYFCARTSCNQ 787


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 627 IGNWSLLNIS*VEFRIELILISGLL*WLRRVSNLEIDCNKAPLGSIHALITSERP 463
           +GN  +L+    +FR+  +L+SGLL  +    NL++  N+A L     L  S+ P
Sbjct: 310 VGNVGMLSDDFAKFRVLCLLLSGLLQAMAVRPNLQMFLNEAVLSWYQRLHGSKTP 364


>At2g30380.1 68415.m03697 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641);
           expression supported by MPSS
          Length = 519

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +2

Query: 311 QILFNEKHLEALKK--LANEDEFYSI--KTTITTGENSKGTEYLSSVKAQAFLENGLSDV 478
           +I  NEKHLE LK    A E E +S+  K      EN K    + SV +  F     S  
Sbjct: 150 EIEVNEKHLEKLKAQVRAKESEIHSLIKKQECLVAENRKLENRIVSVSSFEFAFRAASKS 209

Query: 479 INAWILPNGALLQS 520
           ++ +  P   L+++
Sbjct: 210 VHDFAKPLITLMKA 223


>At3g56360.1 68416.m06268 expressed protein unknown protein 110K5.12
           - Sorghum bicolor, TREMBL:AF124045_5
          Length = 233

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 374 YSIKTT-ITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNG 505
           Y +KTT + +G  +  T +   VK ++F E  +S + N+W++  G
Sbjct: 189 YLLKTTRVRSGMGTVCTHFCL-VKVKSFRETAMSQLNNSWLVQTG 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,490,228
Number of Sequences: 28952
Number of extensions: 199287
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)