Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0469
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0549 + 18696903-18698330 33 0.079
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 31 0.42
05_01_0407 + 3208818-3210218 30 0.74
02_05_0584 - 30135768-30135790,30136104-30136866 30 0.74
05_05_0392 + 24629528-24630442 29 2.3
08_02_0232 - 14584952-14586451 28 3.9
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 3.9
11_06_0516 + 24502645-24504507 27 5.2
09_03_0074 + 12103454-12103613,12104102-12104183,12105145-121052... 27 6.9
08_02_0631 - 19509416-19509868 27 6.9
04_01_0006 - 112476-114182,114627-114676,115289-115463 27 6.9
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 27 9.1
01_05_0567 - 23334967-23335006,23335225-23335394 27 9.1
>10_08_0549 + 18696903-18698330
Length = 475
Score = 33.5 bits (73), Expect = 0.079
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -2
Query: 424 GAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 284
GAV RG ++ A +V V R +AR PPRP A HRE +P
Sbjct: 180 GAVAEMARGGAAAAPSVAPVWGREMLEARSPPRPAFA--HREYDEVP 224
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 31.1 bits (67), Expect = 0.42
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 400 GVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIV-NERKQTT 257
G + ++ A G G H D+ PP +++HR T + P +ER T
Sbjct: 800 GAAGSSTATGAAGSNHTADSTVPPSLLSSEHHRSTESDPSAEHERHDIT 848
>05_01_0407 + 3208818-3210218
Length = 466
Score = 30.3 bits (65), Expect = 0.74
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -2
Query: 421 AVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRH--AQNHRETRTIPIVNERKQTTHD 251
AVG RGV A V V R ARRPP PR A H E +P K + D
Sbjct: 180 AVGEFARGVPG-APTVKPVWARELLSARRPPLPRDVAAPRHPEYEAVPDAGRDKVSHSD 237
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 354 CRTPTRPTACAVDETPRSAVPTAPASCC 437
C TP D +AVPT PA+CC
Sbjct: 172 CMTPLMSVMPCADYLTNTAVPTPPATCC 199
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 427 AGAVGTA--DRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 284
+G +G A DRG ++ GR G A + PP PR R TR P
Sbjct: 144 SGELGRARRDRGPAAAVHGAGRPGGGRASPS-PPPPPRREPGERPTRRSP 192
>08_02_0232 - 14584952-14586451
Length = 499
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 376 VGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTTHDTRD 242
VG G R PPRP+ A H ++R P + D RD
Sbjct: 27 VGARGRRPGSAPPPPPRPQEAHRHGDSRQRPADRDDGYLRSDCRD 71
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -2
Query: 439 GQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQ 263
G H+ + +G T +A G+V R A + P +++ E RT + + +K+
Sbjct: 110 GHHNVSDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERRTSGLSSFKKR 168
>11_06_0516 + 24502645-24504507
Length = 620
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 391 STAQAVGRVGVRHAGDARRPPRPRH 317
STA A G V R G+ RR P+ RH
Sbjct: 155 STAPATGVVMTRRMGEIRRGPQMRH 179
>09_03_0074 +
12103454-12103613,12104102-12104183,12105145-12105200,
12105671-12106048,12106402-12106565
Length = 279
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 351 ACRTPTRPTACAVDETPRSAVPTA 422
+CRTPT PT A D +A P A
Sbjct: 184 SCRTPTTPTHVADDTDTDTAAPPA 207
>08_02_0631 - 19509416-19509868
Length = 150
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 424 GAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNH 305
G +D+G GR G+R G R P PR + H
Sbjct: 89 GVAADSDKGGEERGGRGGRGGLRGVGARLRRPLPRPGEQH 128
>04_01_0006 - 112476-114182,114627-114676,115289-115463
Length = 643
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 295 RTIPIVNERKQTTHDTRD*EMTDDRSNLCNASRFDAFEPLTKKLQTD 155
R P +N+R TT D + DD L + AF P+ + + D
Sbjct: 129 RQAPFINKRTTTTDDHKRKSYDDDEPLLAPKAAAGAFNPIPEDDEDD 175
>07_03_1546 +
27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 221 SVICHFSVACVVSC 262
S++CHF VAC SC
Sbjct: 399 SLLCHFPVACDTSC 412
>01_05_0567 - 23334967-23335006,23335225-23335394
Length = 69
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 348 PACRTPTRPTACAVDETPRSAV 413
PA R PT PT C + PR+ V
Sbjct: 15 PAPRAPTCPTTCCMLRLPRATV 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,468,971
Number of Sequences: 37544
Number of extensions: 154493
Number of successful extensions: 555
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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