Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0469
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            27   5.3  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    27   5.3  
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              27   7.1  
SB_42079| Best HMM Match : L_lactis_RepB_C (HMM E-Value=0.16)          27   7.1  
SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)                27   7.1  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 27   9.3  

>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 342 ASPACRTPTRPTACAVDETPRSAVPTAPAS 431
           A+PA   PTR T   + ETP +A+ +APA+
Sbjct: 658 ATPASGPPTR-TPIPLKETPTAALESAPAA 686


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 348 PACRTPTRPTACAVDETPRSAVPTAPASCCPMG 446
           PA  TPT+PT       P +  PT P +  P G
Sbjct: 98  PATTTPTKPTTTT---PPATTTPTKPTTTTPPG 127


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 337  RPPRPRHAQNHRETRTIPIVNERKQTTHDTRD 242
            RPPRPR   + R+ R  P ++ R +      D
Sbjct: 1828 RPPRPRSGMDRRDERPRPDIDRRDERLRHEAD 1859


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -2

Query: 433 HDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTTH 254
           H  G   T +R     A  +   G RH+GD           + R + ++PIV ER  +T 
Sbjct: 476 HFTGVPSTRERHPFLDAARIR--GRRHSGDPASAQVISETLSSRNSSSVPIVRERSHSTG 533

Query: 253 DTR 245
             R
Sbjct: 534 ANR 536


>SB_42079| Best HMM Match : L_lactis_RepB_C (HMM E-Value=0.16)
          Length = 641

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 346 DARRPPRPRHAQNHRETRTIPIVNERKQTTHDTRD*EMTDDRSNLCNASR 197
           D +R       + + E R      +RKQ  H+ R     +DR  +CN  R
Sbjct: 59  DRKRMCHEDRKRVYHEDRKRMCHKDRKQVCHEDRKQVCNEDRKQVCNEDR 108


>SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)
          Length = 390

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 304 RETRTIPIVNERKQTTHDTRD*EMTDDRSNLCN-ASRFDAF 185
           +  R IP+ + R+++   +   E+ D    LCN A RF AF
Sbjct: 234 KPNRKIPLTSYRRKSVLFSNKQELADLAEELCNSAKRFSAF 274


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 70  YKYIIIGTCCYADASRSVLAQSQLI 144
           YKY +  TCC ++    VL  +Q++
Sbjct: 468 YKYPLFSTCCISNGLADVLVHNQVL 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,363
Number of Sequences: 59808
Number of extensions: 184589
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)