Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0469
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   6.2  
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +3

Query: 342 ASPACRTPTRPTACAVDETPRSAVPT----APASCCP 440
           A+PA   PTRPT       PR+  PT     P +C P
Sbjct: 45  ATPAA-PPTRPTPSRSSAAPRATAPTPTAAPPKTCAP 80


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +3

Query: 342 ASPACRTPTRPTACAVDETPRSAVPT----APASCCP 440
           A+PA   PTRPT       PR+  PT     P +C P
Sbjct: 174 ATPAA-PPTRPTPSRSSAAPRATAPTPTAAPPKTCAP 209


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 352 AGDARRPPRPRHA-QNHRETRTIPIVNERKQTTHDTR 245
           A  + RPP P+ + Q+H  T  +PIV +  Q  H T+
Sbjct: 236 AATSERPPSPQFSNQHHDATNAMPIVYQETQ-LHATK 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,985,658
Number of Sequences: 27780
Number of extensions: 132635
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)