Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0469
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.5  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   1.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 337 RPPRP--RHAQNHRETR--TIPIVNERKQTTHDTR 245
           RPP+    H +  R  R   + +VNE+ QT HD R
Sbjct: 126 RPPQEVISHYRRTRRDRYTNLGLVNEQGQTWHDLR 160


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 282 IGMVRVSLWFWAW 320
           + ++ +SLWF AW
Sbjct: 279 VALMTISLWFMAW 291


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 282 IGMVRVSLWFWAW 320
           + ++ +SLWF AW
Sbjct: 29  VALMTISLWFMAW 41


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 93  LLLCRCQPLCSRTKPINIKLISV 161
           ++LC    L   TKPI+++  SV
Sbjct: 503 IILCEAPALRDNTKPIDMEYSSV 525


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 138 LALCENRAAGIGIATSADYDIFVLKL 61
           +A+ E      G+A  A YD  VLKL
Sbjct: 311 IAIKEKLVKDSGVAKDAAYDNIVLKL 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,098
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)