Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0469
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48240.1 68418.m05960 hypothetical protein                          32   0.20 
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde...    27   4.4  
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    27   7.6  

>At5g48240.1 68418.m05960 hypothetical protein 
          Length = 339

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = -2

Query: 442 IGQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQ 263
           +  H+   +G A +GV     AV +   +HA     P R + A+  ++ R    ++E  +
Sbjct: 195 LDSHEKILIGVATKGVVKLFNAVNKA--QHAQKGLNPSRSKDAKVLKKRRKEAFLSELGK 252

Query: 262 TTHDTRD*EMTDDRSNL 212
           T  DT+   + + RS L
Sbjct: 253 TKTDTKPSTLDEHRSKL 269


>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
           susceptibility protein (PMR6) identical to powdery
           mildew susceptibility protein [Arabidopsis thaliana]
           GI:22506901; similar to pectate lyase 2 GP:6606534 from
           [Musa acuminata]
          Length = 501

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 63  ILIQIYHNRHLLLCRCQPLCSRTKPINIKL 152
           +L+Q + N   LLC    L S TKP+N+ L
Sbjct: 1   MLLQNFSNTIFLLCLFFTLLSATKPLNLTL 30


>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
            class), putative similar to zinc finger protein
            (GI:15811367) [Arabidopsis thaliana]; similar to
            TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
            to disease resistance protein RPP1-WsB (GI:3860165)
            [Arabidopsis thaliana]
          Length = 1996

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 342  ASPACRTPTRPTACAVDETPRSAVPTAPAS 431
            AS +  TPT+P   A D  P    P  PAS
Sbjct: 1948 ASDSVPTPTQPQPPASDSVPTPTQPQPPAS 1977


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,420,820
Number of Sequences: 28952
Number of extensions: 116987
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)