Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0468
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   2.5  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    27   3.3  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   7.6  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 RIKSLYGHKTPI*F*LIFPTATILKT 344
           RIKS+  H+TP+    I PT T+L T
Sbjct: 95  RIKSMKAHETPVITMTIDPTNTLLAT 120


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 260 TNPNQISLWSQDAYLV-LAHISNS 328
           T+ N +S W  D+Y++ LAH+ ++
Sbjct: 194 TSKNNLSYWESDSYIIHLAHVGDT 217


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 590 LAFLNDCSLGFLILAPIHCPIFCDIKMEW 676
           L ++ D  +   ++   HCP++ D+K E+
Sbjct: 278 LPWVQDADIMAEVMGSDHCPVYLDLKEEY 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,888
Number of Sequences: 5004
Number of extensions: 50463
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)