Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0468
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671...    30   1.5  
02_05_0142 - 26227792-26228346,26228486-26228608,26229824-262300...    28   7.9  

>02_03_0097 +
           15166077-15166349,15166623-15166694,15166715-15167161,
           15167579-15167794,15167873-15168213,15168329-15168947
          Length = 655

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 341 F*NCGCWKY-ELKLNRRLVTIERFDSGLCVAPEQQNPTRCQNLHIHRFKKTIKE 183
           F +C  W+Y E+    R +   R    L V P QQ P RC+   +   K  IK+
Sbjct: 527 FRDCFAWEYYEMPGLSRSIVEHRLPIKLGVRPHQQTPRRCKADMLEPVKAEIKQ 580


>02_05_0142 -
           26227792-26228346,26228486-26228608,26229824-26230084,
           26230658-26231116
          Length = 465

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 266 GLCVAPEQQNPTRCQNLHIHRF--KKTIKEHMCNKAY 162
           G C A  ++ P   Q L ++ F   KT+ +H+ NKAY
Sbjct: 178 GYCAAQSERGP---QRLLVYEFMSNKTLDDHLFNKAY 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,557
Number of Sequences: 37544
Number of extensions: 265842
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)